Raspberry Pi OS Software Packages

Raspberry Pi OS is the offical operating system of the Raspberry Pi (previously known as Raspbian). Though not the only Operarting Systems the Raspberry Pi can use, it is the one that has the setup and software managed by the Raspberry Pi foundation. Raspberry Pi OS is a Linux OS based on Debian. As with all Linux distributions there are 1000's of free Open Source programs that can be downloaded from a Terminal Screen or a Desktop app. This section list the 1000's of programs that can be downloaded for the current version of Raspberry Pi OS, Buster version 10 and the previouse version, Stretch.

Science Packages

raspberry Science related packages

To install Raspberry Pi OS software on a Raspberry Pi

Packages are installed using Terminal. First get an updated package list by entering the following command in to terminal if this has not been done today sudo apt update
Then install your chosen package with the command sudo apt install package name Find out more with the Guide to installing software with the apt command

WWW: Please Note: each listing has a www link to a related webpage, the links are supplied by the author. I can not guarantee thay are all active and related to the listed package.

Distro Version:

The latest Distro for Raspberry Pi OS 12 called Bookworm, the previouse version was 11 called Bullseye. Next to each package is the version available for each distro.

Bookworm(#) = Raspberry Pi OS Bookworm
Bullseye(#) = Raspberry Pi OS Bullseye
Bookworm & Bullseye(#) = same version for both.
If only one Distro is listed then the package is only available on that distribution.

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SCIENCE

Last Updated: 05 December, 2024

  • 3depict

    Bookworm:(0.0.23-2) Bullseye:(0.0.22-2+b3) visualisation and analysis for single valued point data www
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  • A

  • abacas

    Bookworm & Bullseye:(1.3.1-9) close gaps in genomic alignments from short reads www

  • abacas-examples

    Bookworm & Bullseye:(1.3.1-9) sample data for abacas to close gaps in genomic alignments www

  • abinit

    Bookworm:(9.6.2-1+b1) Bullseye:(9.2.2-1) package for electronic structure calculations www

  • abyss

    Bookworm:(2.3.1-1) Bullseye:(2.2.5+dfsg-1) de novo, parallel, sequence assembler for short reads www

  • acedb-other

    Bookworm:(4.9.39+dfsg.02-7) Bullseye:(4.9.39+dfsg.02-5) retrieval of DNA or protein sequences www

  • acedb-other-belvu

    Bookworm:(4.9.39+dfsg.02-7) Bullseye:(4.9.39+dfsg.02-5) transitional package for belvu www

  • acedb-other-dotter

    Bookworm:(4.9.39+dfsg.02-7) Bullseye:(4.9.39+dfsg.02-5) transitional package for dotter www

  • aces3

    Bookworm:(3.0.8-9) Bullseye:(3.0.8-7) Advanced Concepts in Electronic Structure III www

  • aces3-data

    Bookworm:(3.0.8-9) Bullseye:(3.0.8-7) Advanced Concepts in Electronic Structure III www

  • achilles

    Bookworm:(2-12+b2) Bullseye:(2-10) Artificial life and evolution simulator www

  • adapterremoval

    Bookworm:(2.3.3-2) Bullseye:(2.3.1-3) rapid adapter trimming, identification, and read merging of gene sequences www

  • adapterremoval-examples

    Bookworm:(2.3.3-2) Bullseye:(2.3.1-3) rapid adapter trimming, identification, and read merging (example data) www

  • adms

    Bookworm:(2.3.7-1) Bullseye:(2.3.6-3) Automatic device model synthesizer for Verilog-AMS www

  • adun-core

    Bookworm:(0.81-14+b2) Bullseye:(0.81-14) Molecular Simulator www

  • adun.app

    Bookworm:(0.81-14+b2) Bullseye:(0.81-14) Molecular Simulator for GNUstep (GUI) www

  • aegean

    Bookworm & Bullseye:(0.16.0+dfsg-2) integrated genome analysis toolkit www

  • aeskulap

    Bookworm:(0.2.2-beta2+git20190406.ef77f01-4+b1) Bullseye:(0.2.2-beta2+git20190406.ef77f01-3+b1) medical image viewer and DICOM network client www

  • aevol

    Bookworm:(5.0+ds-3) Bullseye:(5.0+ds-2) digital genetics model to run Evolution Experiments in silico www

  • aghermann

    Bookworm:(1.1.2-3+b2) Bullseye:(1.1.2-3+b1) Sleep-research experiment manager www

  • aladin

    Bookworm:(12.001+dfsg-1) Bullseye:(11.024+dfsg2-1) Interactive sky atlas for astronomical images and datasets www

  • alfa

    Bookworm:(2.2-1+b1) Bullseye:(2.1-1) Automated Line Fitting Algorithm www

  • algotutor

    Bookworm:(0.8.6-6) Bullseye:(0.8.6-4) program for observing the intermediate steps of algorithm www

  • alien-hunter

    Bookworm:(1.7-10) Bullseye:(1.7-8) Interpolated Variable Order Motifs to identify horizontally acquired DNA www

  • allelecount

    Bookworm:(4.3.0-2) Bullseye:(4.2.1-1) NGS copy number algorithms www

  • altree

    Bookworm:(1.3.2-1+b4) Bullseye:(1.3.1-10+b1) program to perform phylogeny-based association and localization analysis www

  • altree-examples

    Bookworm:(1.3.2-1) Bullseye:(1.3.1-10) example files for ALTree www

  • amap-align

    Bookworm & Bullseye:(2.2+git20080214.600fc29+dfsg-2) Protein multiple alignment by sequence annealing www

  • ampliconnoise

    Bookworm:(1.29-10+b1) Bullseye:(1.29-9) removal of noise from 454 sequenced PCR amplicons www

  • andi

    Bookworm:(0.14-2) Bullseye:(0.13-3+b1) Efficient Estimation of Evolutionary Distances www

  • any2fasta

    Bookworm:(0.4.2-2) convert various sequence formats to FASTA www

  • any2fasta-examples

    Bookworm:(0.4.2-2) convert various sequence formats to FASTA (example data) www

  • aoflagger

    Bookworm:(3.1.0-2+b4) Bullseye:(3.0.0-2+b1) Find RFI in radio astronomical observations www

  • apbs

    Bookworm:(3.4.1-5) Bullseye:(3.0.0+dfsg1-3+b1) Adaptive Poisson Boltzmann Solver www

  • apbs-data

    Bookworm:(3.4.1-5) Bullseye:(3.0.0+dfsg1-3) data files for APBS (Adaptive Poisson Boltzmann Solver) www

  • apbs-doc

    Bookworm:(3.4.1-5) Adaptive Poisson Boltzmann Solver www

  • apertium

    Bookworm:(3.8.3-1+b2) Bullseye:(3.7.1-1) Shallow-transfer machine translation engine www

  • apertium-af-nl

    Bookworm:(0.3.0-3) Bullseye:(0.3.0-2) Transitional dummy package for apertium-afr-nld www

  • apertium-afr-nld

    Bookworm:(0.3.0-3) Bullseye:(0.3.0-2) Apertium translation data for the Afrikaans-Dutch pair www

  • apertium-all-dev

    Bookworm:(3.8.1-2) Metapackage for all tools required for Apertium development www

  • apertium-anaphora

    Bookworm:(1.1.1-1+b1) Bullseye:(1.0.2-1) Anaphora resolution module for Apertium www

  • apertium-apy

    Bookworm:(0.11.7-2.1) Bullseye:(0.11.7-2) Apertium APY service www

  • apertium-arg

    Bookworm & Bullseye:(0.1.2~r65494-2.1) Apertium single language data for Aragonese www

  • apertium-arg-cat

    Bookworm:(0.2.0-3) Bullseye:(0.2.0-2) Apertium translation data for the Aragonese-Catalan pair www

  • apertium-bel

    Bookworm & Bullseye:(0.1.0~r81357-3) Apertium single language data for Belarusian www

  • apertium-bel-rus

    Bookworm:(0.2.1-2) Bullseye:(0.2.1-1) Apertium translation data for the Belarusian-Russian pair www

  • apertium-br-fr

    Bookworm & Bullseye:(0.5.1-1) Apertium linguistic data to translate between Breton and French www

  • apertium-ca-it

    Bookworm:(0.2.2-1) Bullseye:(0.2.1-3) Transitional dummy package for apertium-cat-ita www

  • apertium-cat

    Bookworm & Bullseye:(2.6.0-2) Apertium single language data for Catalan www

  • apertium-cat-ita

    Bookworm:(0.2.2-1) Bullseye:(0.2.1-3) Apertium translation data for the Catalan-Italian pair www

  • apertium-cat-srd

    Bookworm:(1.1.0-2) Bullseye:(1.1.0-1) Apertium translation data for the Catalan-Sardinian pair www

  • apertium-crh

    Bookworm & Bullseye:(0.2.0~r83161-2.1) Apertium single language data for Crimean Tatar www

  • apertium-crh-tur

    Bookworm:(0.3.0-2) Bullseye:(0.3.0-1) Apertium translation data for the Crimean Tatar-Turkish pair www

  • apertium-cy-en

    Bookworm:(0.1.1~r57554-9) Bullseye:(0.1.1~r57554-7) Apertium translation data for the Welsh-English pair www

  • apertium-dan

    Bookworm & Bullseye:(0.6.0-2) Apertium single language data for Danish www

  • apertium-dan-nor

    Bookworm:(1.5.0-2) Bullseye:(1.4.1-2) Apertium translation data for the Danish-Norwegian pair www

  • apertium-dev

    Bookworm:(3.8.3-1+b2) Bullseye:(3.7.1-1) Development tools and library for Apertium www

  • apertium-en-gl

    Bookworm:(0.5.4-1) Bullseye:(0.5.2~r57551-3) Apertium translation data for the English-Galician pair www

  • apertium-eng-cat

    Bookworm:(1.0.1-5) Bullseye:(1.0.1-4) Apertium translation data for the English-Catalan pair www

  • apertium-eng-spa

    Bookworm:(0.8.1-2) Apertium translation data for the English-Spanish pair www

  • apertium-eo-en

    Bookworm:(1.0.2-1) Bullseye:(1.0.0~r63833-3) Apertium linguistic data to translate between Esperanto and English www

  • apertium-eo-fr

    Bookworm & Bullseye:(0.9.1-1) Apertium translation data for the Esperanto-French pair www

  • apertium-es-ast

    Bookworm:(1.1.1-2) Bullseye:(1.1.0~r51165-3) Transitional dummy package for apertium-spa-ast www

  • apertium-es-it

    Bookworm:(0.2.1-3) Bullseye:(0.2.0~r78826-2.1) Transitional dummy package for apertium-spa-ita www

  • apertium-eu-en

    Bookworm:(0.3.3-1) Bullseye:(0.3.1~r56205-3) Apertium translation data for the Basque-English pair www

  • apertium-eval-translator

    Bookworm:(1.2.1-3) Bullseye:(1.2.1-2) Evaluate machine translation output against reference www

  • apertium-fra

    Bookworm & Bullseye:(1.5.0-1.1) Apertium single language data for French www

  • apertium-fra-cat

    Bookworm:(1.10.0-1) Bullseye:(1.9.0-1) Apertium translation data for the French-Catalan pair www

  • apertium-fra-frp

    Bookworm:(1.1.0-1) Apertium translation data for the French-Arpitan pair www

  • apertium-get

    Bookworm:(1.0.0-3) Bullseye:(1.0.0-2) Helper for Apertium and Giellatekno languages and pairs www

  • apertium-hbs

    Bookworm & Bullseye:(0.5.0~r68212-3.1) Apertium single language data for Serbo-Croatian www

  • apertium-hbs-eng

    Bookworm:(0.5.1-2) Bullseye:(0.5.1-1) Apertium translation data for the Serbo-Croatian - English pair www

  • apertium-hbs-mkd

    Bookworm:(0.1.1-1) Bullseye:(0.1.0~r76450-4) Apertium translation data for the Serbo-Croatian-Macedonian pair www

  • apertium-hbs-slv

    Bookworm:(0.5.1-2) Bullseye:(0.5.1-1) Apertium translation data for the Serbo-Croatian-Slovenian pair www

  • apertium-hin

    Bookworm:(0.1.0~r59158-4) Bullseye:(0.1.0~r59158-2.1) Apertium single language data for Hindi www

  • apertium-id-ms

    Bookworm & Bullseye:(0.1.2-3) Transitional dummy package for apertium-ind-zlm www

  • apertium-ind-zlm

    Bookworm & Bullseye:(0.1.2-3) Apertium translation data for the Indonesian-Malay pair www

  • apertium-is-sv

    Bookworm:(0.1.1-2) Bullseye:(0.1.0~r76450-3) Transitional dummy package for apertium-isl-swe www

  • apertium-isl

    Bookworm & Bullseye:(0.1.0~r65494-2.1) Apertium single language data for Icelandic www

  • apertium-isl-eng

    Bookworm:(0.1.2-1) Bullseye:(0.1.0~r66083-3) Apertium translation data for the Icelandic-English pair www

  • apertium-isl-swe

    Bookworm:(0.1.1-2) Apertium translation data for the Icelandic-Swedish pair www

  • apertium-ita

    Bookworm & Bullseye:(0.10.0~r82237-2.1) Apertium single language data for Italian www

  • apertium-kaz

    Bookworm & Bullseye:(0.1.0~r61338-2.1) Apertium single language data for Kazakh www

  • apertium-kaz-tat

    Bookworm & Bullseye:(0.2.1-1) Apertium translation data for the Kazakh-Tatar pair www

  • apertium-lex-tools

    Bookworm:(0.4.2-2) Bullseye:(0.2.7-1) Constraint-based lexical selection module www

  • apertium-lex-tools-dev

    Bookworm:(0.4.2-2) Development library for Apertium lexical selection module www

  • apertium-mk-bg

    Bookworm:(0.2.1-2) Bullseye:(0.2.0~r49489-3) Transitional dummy package for apertium-mkd-bul www

  • apertium-mk-en

    Bookworm:(0.1.3-2) Bullseye:(0.1.1~r57554-3) Transitional dummy package for apertium-mkd-eng www

  • apertium-mkd-bul

    Bookworm:(0.2.1-2) Apertium translation data for the Macedonian-Bulgarian pair www

  • apertium-mkd-eng

    Bookworm:(0.1.3-2) Apertium translation data for the Macedonian-English pair www

  • apertium-mlt-ara

    Bookworm:(0.2.0~r62623-3) Bullseye:(0.2.0~r62623-2.1) Apertium translation data for the Maltese-Arabic pair www

  • apertium-nno

    Bookworm & Bullseye:(1.0.0-2) Apertium single language data for Norwegian Nynorsk www

  • apertium-nno-nob

    Bookworm:(1.5.0-1) Bullseye:(1.3.0-1) Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair www

  • apertium-nob

    Bookworm & Bullseye:(1.0.0-2) Apertium single language data for Norwegian Bokmål www

  • apertium-oci

    Bookworm & Bullseye:(0.1.0-1.1) Apertium single language data for Occitan www

  • apertium-oci-fra

    Bookworm:(1.0.0-1) Bullseye:(0.3.0-3) Apertium translation data for the Occitan-French pair www

  • apertium-pol

    Bookworm & Bullseye:(0.1.1-2) Apertium single language data for Polish www

  • apertium-pol-szl

    Bookworm:(0.2.1-3) Bullseye:(0.2.1-2) Apertium translation data for the Polish-Silesian pair www

  • apertium-por-cat

    Bookworm:(0.10.1-2) Bullseye:(0.10.0-1) Apertium translation data for the Portuguese-Catalan pair www

  • apertium-recursive

    Bookworm:(1.1.2-1+b1) Bullseye:(1.0.1-1) Apertium recursive structural transfer module www

  • apertium-regtest

    Bookworm:(0.9.1-3) Regression test suite for Apertium languages and pairs www

  • apertium-rus

    Bookworm & Bullseye:(0.2.0~r82706-1.1) Apertium single language data for Russian www

  • apertium-rus-ukr

    Bookworm:(0.2.1-4) Bullseye:(0.2.1-2) Apertium translation data for the Russian-Ukrainian pair www

  • apertium-separable

    Bookworm:(0.6.1-1+b1) Bullseye:(0.3.6-2) Reordering separable/discontiguous multiwords www

  • apertium-sme-nob

    Bookworm & Bullseye:(0.6.1+ds.1-2) Apertium translation data for the Northern Sami-Norwegian Bokmål pair www

  • apertium-spa

    Bookworm & Bullseye:(1.1.0~r79716-2.1) Apertium single language data for Spanish www

  • apertium-spa-arg

    Bookworm:(0.5.0-2) Bullseye:(0.5.0-1) Apertium translation data for the Spanish-Aragonese pair www

  • apertium-spa-ast

    Bookworm:(1.1.1-2) Apertium translation data for the Spanish-Asturian pair www

  • apertium-spa-cat

    Bookworm:(2.2.0-3) Bullseye:(2.2.0-2) Apertium translation data for the Spanish-Catalan pair www

  • apertium-spa-ita

    Bookworm:(0.2.1-3) Bullseye:(0.2.0~r78826-2.1) Apertium translation data for the Spanish-Italian pair www

  • apertium-srd

    Bookworm & Bullseye:(1.2.0-1) Apertium single language data for Sardinian www

  • apertium-srd-ita

    Bookworm:(1.1.0-2) Bullseye:(1.1.0-1) Apertium translation data for the Sardinian-Italian pair www

  • apertium-swe

    Bookworm & Bullseye:(0.8.0-2) Apertium single language data for Swedish www

  • apertium-swe-dan

    Bookworm:(0.8.1-3) Bullseye:(0.8.1-2) Apertium translation data for the Swedish-Danish pair www

  • apertium-swe-nor

    Bookworm:(0.4.0-1) Bullseye:(0.3.1-1) Apertium translation data for the Swedish-Norwegian pair www

  • apertium-szl

    Bookworm & Bullseye:(0.1.0-1.1) Apertium single language data for Silesian www

  • apertium-tat

    Bookworm & Bullseye:(0.1.0~r60887-2.1) Apertium single language data for Tatar www

  • apertium-tur

    Bookworm & Bullseye:(0.2.0~r83161-2.1) Apertium single language data for Turkish www

  • apertium-ukr

    Bookworm & Bullseye:(0.1.0~r82563-2) Apertium single language data for Ukrainian www

  • apertium-urd

    Bookworm:(0.1.0~r61311-3) Bullseye:(0.1.0~r61311-2.1) Apertium single language data for Urdu www

  • apertium-urd-hin

    Bookworm:(0.1.0~r64379-4) Bullseye:(0.1.0~r64379-2.1) Apertium translation data for the Urdu-Hindi pair www

  • aragorn

    Bookworm & Bullseye:(1.2.38-4) tRNA and tmRNA detection in nucleotide sequences www

  • arb-common

    Bookworm:(6.0.6-5) Bullseye:(6.0.6-4) phylogenetic sequence analysis suite - common files www

  • arden

    Bookworm & Bullseye:(1.0-5) specificity control for read alignments using an artificial reference www

  • art-nextgen-simulation-tools

    Bookworm:(20160605+dfsg-4+b2) Bullseye:(20160605+dfsg-4+b1) simulation tools to generate synthetic next-generation sequencing reads www

  • art-nextgen-simulation-tools-profiles

    Bookworm & Bullseye:(20160605+dfsg-4) profiles for art simulation tools www

  • artemis

    Bookworm:(18.2.0+dfsg-3) genome browser and annotation tool www

  • artfastqgenerator

    Bookworm & Bullseye:(0.0.20150519-4) outputs artificial FASTQ files derived from a reference genome www

  • artfastqgenerator-examples

    Bookworm & Bullseye:(0.0.20150519-4) outputs artificial FASTQ files derived from a reference genome (examples) www

  • asdftool

    Bookworm:(2.14.3-1+deb12u1) Bullseye:(2.7.2-1) Command line tool to manipulate ASDF scientific data files www

  • ase

    Bookworm:(3.22.1-3) Bullseye:(3.21.1-2) Atomic Simulation Environment www

  • assembly-stats

    Bookworm:(1.0.1+ds-6) Bullseye:(1.0.1+ds-3) get assembly statistics from FASTA and FASTQ files www

  • assemblytics

    Bookworm:(1.2.1+dfsg-1) Bullseye:(1.0+ds-2) detect and analyze structural variants from a genome assembly www

  • astap

    Bookworm:(2022.12.09-1) astrometric (plate) solver, stacking of images, photometry and FITS viewer www

  • astap-cli

    Bookworm:(2022.12.09-1) astrometric (plate) solver, command line version www

  • astro-tasks

    Bookworm:(4.0) Bullseye:(3.0) Debian Astronomy Pure Blend (tasksel tasks) www

  • astromatic

    Bookworm:(1.3) Bullseye:(1.2) Astronomical pipeline software collection www

  • astrometry-data-2mass

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader www

  • astrometry-data-2mass-00

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (2'-2.8') www

  • astrometry-data-2mass-01

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (2.8'-4') www

  • astrometry-data-2mass-02

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (4'-5.6') www

  • astrometry-data-2mass-03

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (5.6'-8') www

  • astrometry-data-2mass-04

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (8'-11') www

  • astrometry-data-2mass-05

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (11'-16') www

  • astrometry-data-2mass-06

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (16'-22') www

  • astrometry-data-2mass-07

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (22'-30') www

  • astrometry-data-2mass-08-19

    Bookworm & Bullseye:(1.1) Astrometry.net 2MASS index files downloader (30'-2000') www

  • astrometry-data-tycho2

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 index files www

  • astrometry-data-tycho2-07

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 index files (22'-30') www

  • astrometry-data-tycho2-07-bigendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 big endian index files (22'-30') www

  • astrometry-data-tycho2-07-littleendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 little endian index files (22'-30') www

  • astrometry-data-tycho2-08

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 index files (30'-44') www

  • astrometry-data-tycho2-08-bigendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 big endian index files (30'-44') www

  • astrometry-data-tycho2-08-littleendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 little endian index files (30'-44') www

  • astrometry-data-tycho2-09

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 index files (44'-60') www

  • astrometry-data-tycho2-09-bigendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 big endian index files (44'-60') www

  • astrometry-data-tycho2-09-littleendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 little endian index files (44'-60') www

  • astrometry-data-tycho2-10-19

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 index files (60'-2000') www

  • astrometry-data-tycho2-10-19-bigendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 big endian index files (60'-2000') www

  • astrometry-data-tycho2-10-19-littleendian

    Bookworm & Bullseye:(2-4) Astrometry.net Tycho-2 little endian index files (60'-2000') www

  • astrometry.net

    Bookworm:(0.93+dfsg-1+b1) Bullseye:(0.82+dfsg-1) Astrometry plate solver www

  • astronomical-almanac

    Bookworm & Bullseye:(5.6-7) astronomical almanac - calculate planet and star positions www

  • astropy-utils

    Bookworm:(5.2.1-2) Bullseye:(4.2-6) Command line tools from astropy www

  • atac

    Bookworm:(0~20150903+r2013-8+b3) Bullseye:(0~20150903+r2013-8+b1) genome assembly-to-assembly comparison www

  • ataqv

    Bookworm:(1.3.0+ds-2) Bullseye:(1.2.1+ds-1) ATAC-seq QC and visualization www

  • atropos

    Bookworm:(1.1.31+dfsg-3+rpi1+b1) Bullseye:(1.1.29+dfsg-1) NGS read trimming tool that is specific, sensitive, and speedy www

  • augur

    Bookworm:(20.0.0-1) Bullseye:(11.0.0-1) pipeline components for real-time virus analysis www

  • augustus

    Bookworm:(3.5.0+dfsg-2) Bullseye:(3.4.0+dfsg2-2) gene prediction in eukaryotic genomes www

  • augustus-data

    Bookworm:(3.5.0+dfsg-2) Bullseye:(3.4.0+dfsg2-2) data files for AUGUSTUS www

  • autodock

    Bookworm:(4.2.6-9) Bullseye:(4.2.6-8) analysis of ligand binding to protein structure www

  • autodock-getdata

    Bookworm:(4.2.6-9) Bullseye:(4.2.6-8) instructions for getData to collect compounds www

  • autodock-test

    Bookworm:(4.2.6-9) Bullseye:(4.2.6-8) test files for AutoDock www

  • autodock-vina

    Bookworm:(1.2.3-2) Bullseye:(1.1.2-6) docking of small molecules to proteins www

  • autogrid

    Bookworm:(4.2.6-9) Bullseye:(4.2.6-8) pre-calculate binding of ligands to their receptor www

  • autogrid-test

    Bookworm:(4.2.6-9) Bullseye:(4.2.6-8) test files for AutoGrid www

  • avce00

    Bookworm:(2.0.0-9) Bullseye:(2.0.0-8) Conversion of ESRI Arcinfo Vector Coverage in E00 format www

  • avogadro

    Bookworm:(1.97.0-1) Bullseye:(1.93.0-2) Molecular Graphics and Modelling System www

  • avogadro-utils

    Bookworm:(1.97.0-3+b1) Bullseye:(1.93.1-3) Molecular Graphics and Modelling System (library) www

  • axe-demultiplexer

    Bookworm:(0.3.3+dfsg-3+b1) Bullseye:(0.3.3+dfsg-3) Trie-based DNA sequencing read demultiplexer www
  • Back to top

  • B

  • baitfisher

    Bookworm:(1.2.7+git20211020.de26d5c+dfsg-1) Bullseye:(1.2.7+git20190123.241d060+dfsg-1) software package for designing hybrid enrichment probes www

  • bali-phy

    Bookworm:(3.6.1+dfsg-1+b1) Bullseye:(3.6.0+dfsg-1) Bayesian Inference of Alignment and Phylogeny www

  • bamclipper

    Bookworm:(1.0.0-3) Remove gene-specific primer sequences from SAM/BAM alignments www

  • bamkit

    Bookworm:(0.0.1+git20170413.ccd079d-3) Bullseye:(0.0.1+git20170413.ccd079d-2) tools for common BAM file manipulations www

  • bamtools

    Bookworm:(2.5.2+dfsg-4) Bullseye:(2.5.1+dfsg-9) toolkit for manipulating BAM (genome alignment) files www

  • bandage

    Bookworm:(0.9.0-2) Bullseye:(0.8.1-4) Bioinformatics Application for Navigating De novo Assembly Graphs Easily www

  • bandage-examples

    Bookworm:(0.9.0-2) Bullseye:(0.8.1-4) Bioinformatics Application for Navigating De novo Assembly Graphs Easily (data) www

  • barrnap

    Bookworm:(0.9+dfsg-3) Bullseye:(0.9+dfsg-2) rapid ribosomal RNA prediction www

  • bart

    Bookworm:(0.8.00-3) Bullseye:(0.6.00-3+deb11u1) tools for computational magnetic resonance imaging www

  • bart-view

    Bookworm:(0.2.00-1) Bullseye:(0.1.00-4) viewer for multi-dimensional complex-valued data www

  • bbmap

    Bookworm:(39.01+dfsg-2) Bullseye:(38.90+dfsg-1) BBTools genomic aligner and other tools for short sequences www

  • bbmap-jni

    Bookworm:(39.01+dfsg-2) Bullseye:(38.90+dfsg-1) short read aligner and other bioinformatic tools - JNI library www

  • bcbio

    Bookworm:(1.2.9-2) Bullseye:(1.2.5-1) toolkit for analysing high-throughput sequencing data www

  • bcftools

    Bookworm:(1.13-1) Bullseye:(1.11-1) genomic variant calling and manipulation of VCF/BCF files www

  • beads

    Bookworm:(1.1.22-1+b1) Bullseye:(1.1.20-2) 2-DE electrophoresis gel image spot detection www

  • beagle

    Bookworm:(220722-1) Bullseye:(5.1-200518+dfsg-1) Genotype calling, genotype phasing and imputation of ungenotyped markers www

  • beast-mcmc

    Bookworm:(1.10.4+dfsg-5) Bullseye:(1.10.4+dfsg-2) Bayesian MCMC phylogenetic inference www

  • beast2-mcmc

    Bookworm:(2.7.3+dfsg-1) Bullseye:(2.6.3+dfsg-2) Bayesian MCMC phylogenetic inference www

  • bedops

    Bookworm:(2.4.41+dfsg-1) Bullseye:(2.4.39+dfsg1-2) high-performance genomic feature operations www

  • bedtools

    Bookworm:(2.30.0+dfsg-3) Bullseye:(2.30.0+dfsg-1) suite of utilities for comparing genomic features www

  • bedtools-test

    Bookworm:(2.30.0+dfsg-3) Bullseye:(2.30.0+dfsg-1) test data for the bedtools package www

  • belvu

    Bookworm:(4.44.1+dfsg-7+b1) Bullseye:(4.44.1+dfsg-6+b1) multiple sequence alignment viewer and phylogenetic tool www

  • berkeley-express

    Bookworm:(1.5.3+dfsg-3+b1) Bullseye:(1.5.3+dfsg-1+b3) Streaming quantification for high-throughput sequencing www

  • bio-eagle-examples

    Bookworm & Bullseye:(2.4.1-3) Examples for bio-eagle www

  • bio-rainbow

    Bookworm & Bullseye:(2.0.4+dfsg-2) clustering and assembling short reads for bioinformatics www

  • bio-vcf

    Bookworm:(0.9.5-3) Bullseye:(0.9.5-2) domain specific language (DSL) for processing the VCF format www

  • bioawk

    Bookworm:(1.0-4+deb12u1) extension of awk for biological sequence analysis www

  • biogenesis

    Bookworm & Bullseye:(0.8-3.1) artificial life program that simulates evolution of organisms www

  • biomaj

    Bookworm & Bullseye:(1.2.3-12) biological data-bank updater www

  • biomaj-properties

    Bookworm & Bullseye:(1.2.3-12) biological data-bank updater - example properties files www

  • biomaj-watcher

    Bookworm & Bullseye:(1.2.2-5) biological data-bank updater - web interface www

  • bioperl

    Bookworm:(1.7.8-1) Bullseye:(1.7.7-2) Perl tools for computational molecular biology www

  • bioperl-run

    Bookworm:(1.7.3-9) Bullseye:(1.7.3-6) BioPerl wrappers: scripts www

  • biosig-tools

    Bookworm:(2.5.0-1) Bullseye:(2.1.2-4) format conversion tools for biomedical data formats www

  • biosquid

    Bookworm & Bullseye:(1.9g+cvs20050121-12) utilities for biological sequence analysis www

  • biosyntax

    Bookworm:(1.0.0b-4) Bullseye:(1.0.0b-2) Syntax Highlighting for Computational Biology (metapackage) www

  • biosyntax-common

    Bookworm:(1.0.0b-4) Bullseye:(1.0.0b-2) Syntax Highlighting for Computational Biology (common files) www

  • biosyntax-example

    Bookworm:(1.0.0b-4) Bullseye:(1.0.0b-2) Syntax Highlighting for Computational Biology (example) www

  • biosyntax-gedit

    Bookworm:(1.0.0b-4) Bullseye:(1.0.0b-2) Syntax Highlighting for Computational Biology (gedit) www

  • biosyntax-less

    Bookworm:(1.0.0b-4) Bullseye:(1.0.0b-2) Syntax Highlighting for Computational Biology (less) www

  • biosyntax-vim

    Bookworm:(1.0.0b-4) Bullseye:(1.0.0b-2) Syntax Highlighting for Computational Biology (vim) www

  • bitseq

    Bookworm:(0.7.5+dfsg-6) Bullseye:(0.7.5+dfsg-5) Bayesian Inference of Transcripts from Sequencing Data www

  • bitwise

    Bookworm:(0.43-1) Bullseye:(0.41-1) Interactive bitwise operation in ncurses www

  • bkchem

    Bookworm:(0.14.0~pre4+git20211228-3) Chemical structures editor www

  • blixem

    Bookworm:(4.44.1+dfsg-7+b1) Bullseye:(4.44.1+dfsg-6+b1) interactive browser of sequence alignments www

  • bluebrain-hpc-coding-conventions

    Bookworm:(1.0.0+git20221201-2) BlueBrain HPC Team C++ Development Guidelines www

  • bmt

    Bookworm & Bullseye:(0.6-1.1) software analysis benchmarking toolkit www

  • bodr

    Bookworm & Bullseye:(10-2) Blue Obelisk Data Repository www

  • boinc-app-milkyway

    Bookworm:(0.18d-4+b12) Bullseye:(0.18d-4+b10) Milkyway@home application for the BOINC client www

  • boinc-app-seti

    Bookworm:(8.00~svn4035-1+rpi1+b10) Bullseye:(8.00~svn4035-1+rpi1+b7) SETI@home application for the BOINC client www

  • boinc-app-seti-graphics

    Bookworm:(8.00~svn4035-1+rpi1+b10) Bullseye:(8.00~svn4035-1+rpi1+b7) SETI@home application for the BOINC client (with graphics) www

  • bolt-lmm-example

    Bookworm:(2.4.0+dfsg-1) Bullseye:(2.3.4+dfsg-3) Examples for bolt-lmm www

  • boolector

    Bookworm:(1.5.118.6b56be4.121013-1.3) Bullseye:(1.5.118.6b56be4.121013-1) SMT solver for bit-vectors and arrays www

  • bornagain

    Bookworm:(1.19.0-3+b4) Simulate and fit X-ray and neutron GISAS -- binary www

  • bowtie-examples

    Bookworm:(1.3.1-1) Bullseye:(1.3.0+dfsg1-1) Examples for bowtie, the ultrafast memory-efficient short read aligner www

  • bowtie2-examples

    Bookworm:(2.5.0-3) Bullseye:(2.4.2-2) Examples for bowtie2 www

  • boxshade

    Bookworm & Bullseye:(3.3.1-14) Pretty-printing of multiple sequence alignments www

  • bppphyview

    Bookworm:(0.6.1-4) Bullseye:(0.6.1-2) Bio++ Phylogenetic Viewer www

  • bppsuite

    Bookworm:(2.4.1-6) Bullseye:(2.4.1-3) Bio++ program suite www

  • bppsuite-examples

    Bookworm:(2.4.1-6) Bullseye:(2.4.1-3) Examples for Bio++ program suite www

  • brain2mesh-demos

    Bookworm & Bullseye:(0.7.9-2) sample files and demo scripts for Brain2Mesh www

  • brig

    Bookworm & Bullseye:(0.95+dfsg-3) BLAST Ring Image Generator www

  • busco

    Bookworm:(5.4.4-1) Bullseye:(5.0.0-1) benchmarking sets of universal single-copy orthologs www

  • bwa

    Bookworm:(0.7.17-7) Bullseye:(0.7.17-6) Burrows-Wheeler Aligner www
  • Back to top

  • C

  • c2x

    Bookworm:(2.40.e+ds-1) Bullseye:(2.35a+ds-1) converter between DFT electronic structure codes formats www

  • cafeobj

    Bookworm & Bullseye:(1.6.0-2) new generation algebraic specification and programming language www

  • cafeobj-mode

    Bookworm & Bullseye:(1.6.0-2) Emacs major mode for editing CafeOBJ source code www

  • calculix-ccx

    Bookworm:(2.20-1) Bullseye:(2.17-3) Three-Dimensional Structural Finite Element Program www

  • calculix-cgx

    Bookworm:(2.17+dfsg-2+b1) Bullseye:(2.17+dfsg-2) Calculix cgx is a 3-dimensional pre- and post-processor for fem www

  • callisto

    Bookworm:(1.1.0-2+b2) Bullseye:(1.1.0-2+b1) Daemon for e-Callisto hardware www

  • canu

    Bookworm:(2.0+dfsg-2+b4) Bullseye:(2.0+dfsg-1+b2) single molecule sequence assembler for genomes www

  • casacore-data-igrf

    Bookworm & Bullseye:(12-1) International Geomagnetic Reference Field data for casacore www

  • casacore-data-jpl-de200

    Bookworm & Bullseye:(2007.07.05+ds.1-1) Jet Propulsion Laboratory Development Ephemeris DE200 for casacore www

  • casacore-data-jpl-de405

    Bookworm & Bullseye:(2007.07.05+ds.1-1) Jet Propulsion Laboratory Development Ephemeris DE405 for casacore www

  • casacore-data-lines

    Bookworm:(0+git2016.11.26-2.1) Bullseye:(0+git2016.11.26-2) Table of spectral line frequencies for casacore www

  • casacore-data-observatories

    Bookworm & Bullseye:(0+git2018.12.08-2) Table of radio observatory coordinates for casacore www

  • casacore-data-sources

    Bookworm:(2-4) Bullseye:(2-2) Table of ICRF reference source coordinates for casacore www

  • casacore-data-tai-utc

    Bookworm & Bullseye:(1.3) Difference table between TAI and UTC for casacore

  • casacore-tools

    Bookworm:(3.5.0-2+b2) Bullseye:(3.3.0-4+b1) Tools built with CASA www

  • cassbeam

    Bookworm & Bullseye:(1.1-3) Cassegrain antenna modelling www

  • cassiopee

    Bookworm:(1.0.9-3+b1) Bullseye:(1.0.9-3) index and search tool in genomic sequences www

  • cat-bat

    Bookworm:(5.2.3-2) Bullseye:(5.2.2-1) taxonomic classification of contigs and metagenome-assembled genomes (MAGs) www

  • catfishq

    Bookworm:(1.4.0+ds-1) concatenates fastq files www

  • cba

    Bookworm:(0.3.6-6+b1) Bullseye:(0.3.6-5) Continuous Beam Analysis www

  • cbflib-bin

    Bookworm:(0.9.7+dfsg1-2+b1) Bullseye:(0.9.6+dfsg1-2+b2) utilities to manipulate CBF files www

  • cclib

    Bookworm & Bullseye:(1.6.2-2) Parsers and algorithms for computational chemistry www

  • cclib-data

    Bookworm & Bullseye:(1.6.2-2) Parsers and algorithms for computational chemistry (data files) www

  • cct

    Bookworm:(1:1.0.3-1) Bullseye:(1:1.0.0-1) visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences www

  • cct-examples

    Bookworm:(1:1.0.3-1) Bullseye:(1:1.0.0-1) example data for testing the package cct www

  • cd-hit

    Bookworm:(4.8.1-4) Bullseye:(4.8.1-3) suite of programs designed to quickly group sequences www

  • cdbfasta

    Bookworm:(1.00+git20181005.014498c+dfsg-4+b1) Bullseye:(1.00+git20181005.014498c+dfsg-2) Constant DataBase indexing and retrieval tools for multi-FASTA files www

  • celestia-common-nonfree

    Bookworm & Bullseye:(1.6.1-1) Non-free datafiles for Celestia, a real-time visual space simulation www

  • centrifuge

    Bookworm:(1.0.3-11+b1) Bullseye:(1.0.3-8) rapid and memory-efficient system for classification of DNA sequences www

  • cernlib

    Bookworm & Bullseye:(20061220+dfsg3-4.4) CERNLIB data analysis suite - general use metapackage www

  • cernlib-core

    Bookworm & Bullseye:(20061220+dfsg3-4.4) CERNLIB data analysis suite - main libraries and programs www

  • cernlib-extras

    Bookworm & Bullseye:(20061220+dfsg3-4.4) CERNLIB data analysis suite - extra programs www

  • cg3

    Bookworm:(1.3.9-1+b3) Bullseye:(1.3.2-1) Tools for using the 3rd edition of Constraint Grammar (CG-3) www

  • cg3-dev

    Bookworm:(1.3.9-1) Bullseye:(1.3.2-1) Metapackage providing both CG-3 CLI dev tools and dev library www

  • cgns-convert

    Bookworm & Bullseye:(3.4.0-3) CFD General Notation System - Conversion tools www

  • cgview

    Bookworm & Bullseye:(0.0.20100111-7) Circular Genome Viewer www

  • ch5m3d

    Bookworm:(1.2.5+dfsg-3) Bullseye:(1.2.5+dfsg-2.1) create and visualize 3-dimensional drawings of simple molecules www

  • changeo

    Bookworm:(1.3.0-1) Bullseye:(1.0.2-1) Repertoire clonal assignment toolkit (Python 3) www

  • checkit-tiff

    Bookworm:(0.4.2-1) Bullseye:(0.2.3-2) conformance checker for baseline TIFFs www

  • chemical-structures

    Bookworm:(2.2.dfsg.0-20) Bullseye:(2.2.dfsg.0-18) web service providing molecular structures in open formats

  • chemical-structures-data

    Bookworm:(2.2.dfsg.0-20) Bullseye:(2.2.dfsg.0-18) set of molecular structures in open formats

  • chemps2

    Bookworm:(1.8.12-1+b1) Bullseye:(1.8.10-2) Executable to call libchemps2-3 from the command line www

  • chemtool

    Bookworm:(1.6.14-6+b3) Bullseye:(1.6.14-6+b2) chemical structures drawing program www

  • chimeraslayer

    Bookworm:(20101212+dfsg1-5) Bullseye:(20101212+dfsg1-4) detects likely chimeras in PCR amplified DNA www

  • chip-seq

    Bookworm:(1.5.5-3+b8) Bullseye:(1.5.5-3+b5) tools performing common ChIP-Seq data analysis tasks www

  • chip-seq-data

    Bookworm & Bullseye:(1.5.5-3) tools performing common ChIP-Seq data analysis tasks (data) www

  • chromhmm

    Bookworm:(1.24+dfsg-1) Bullseye:(1.21+dfsg-1) Chromatin state discovery and characterization www

  • chromimpute

    Bookworm:(1.0.3+dfsg-4) Bullseye:(1.0.3+dfsg-2) Large-scale systematic epigenome imputation www

  • cif-linguist

    Bookworm:(0.4.2-4) Bullseye:(0.4.2-2) transform CIF data among CIF formats and dialects www

  • cif-tools

    Bookworm:(1.0.7-1) Bullseye:(1.0.0-3) Suite of tools to manipulate, validate and query mmCIF files www

  • cif2hkl

    Bookworm:(1.4.2+ds1-1) Convert crystallographic descriptions into HKL F^2 reflection lists www

  • circos

    Bookworm & Bullseye:(0.69.9+dfsg-2) plotter for visualizing data www

  • circos-tools

    Bookworm & Bullseye:(0.23-1) plotter for visualizing data - helper utilities www

  • ckon

    Bookworm:(0.7.1-5+b1) Bullseye:(0.7.1-3+b5) automatic build tool for ROOT data analysis software www

  • clearcut

    Bookworm:(1.0.9+git20211013.b799afe-1) Bullseye:(1.0.9-6) extremely efficient phylogenetic tree reconstruction www

  • clonalframe

    Bookworm:(1.2-11+b1) Bullseye:(1.2-10+b1) inference of bacterial microevolution using multilocus sequence data www

  • clonalframeml

    Bookworm:(1.12-3) Bullseye:(1.12-1) Efficient Inference of Recombination in Whole Bacterial Genomes www

  • clonalorigin

    Bookworm:(1.0-6+b1) Bullseye:(1.0-4) inference of homologous recombination in bacteria using whole genome sequences www

  • clustalo

    Bookworm & Bullseye:(1.2.4-7) General-purpose multiple sequence alignment program for proteins www

  • clustalw

    Bookworm & Bullseye:(2.1+lgpl-7) global multiple nucleotide or peptide sequence alignment www

  • clustalx

    Bookworm & Bullseye:(2.1+lgpl-9) Multiple alignment of nucleic acid and protein sequences (graphical interface) www

  • cmor-tables

    Bookworm & Bullseye:(3.3-1.1) MIP tables for the Climate Model Output Rewriter library www

  • cmtk

    Bookworm:(3.3.1p2+dfsg-2+b1) Bullseye:(3.3.1p1+dfsg-2+b1) Computational Morphometry Toolkit www

  • cod-tools

    Bookworm:(3.7.0+dfsg-1+b3) Bullseye:(3.1.0+dfsg-3) tools for manipulating CIF format files www

  • code-saturne

    Bookworm & Bullseye:(6.0.2-2) General purpose Computational Fluid Dynamics (CFD) software www

  • code-saturne-bin

    Bookworm & Bullseye:(6.0.2-2) General purpose Computational Fluid Dynamics (CFD) software - binaries www

  • code-saturne-data

    Bookworm & Bullseye:(6.0.2-2) General purpose Computational Fluid Dynamics (CFD) software - data www

  • code-saturne-doc

    Bookworm & Bullseye:(6.0.2-2) General purpose Computational Fluid Dynamics (CFD) software - Documentation www

  • code-saturne-include

    Bookworm & Bullseye:(6.0.2-2) General purpose Computational Fluid Dynamics (CFD) software - includes www

  • codonw

    Bookworm:(1.4.4-7) Bullseye:(1.4.4-6) Correspondence Analysis of Codon Usage www

  • coinor-cbc

    Bookworm:(2.10.8+ds1-1) Bullseye:(2.10.5+ds1-3) Coin-or branch-and-cut mixed integer programming solver www

  • coinor-clp

    Bookworm:(1.17.6-3) Bullseye:(1.17.5+repack1-1) Coin-or linear programming solver www

  • coinor-csdp

    Bookworm:(6.2.0-4) Bullseye:(6.2.0-3) Software package for semidefinite programming (binaries) www

  • coinor-libbonmin4

    Bookworm:(1.8.9-1) COIN-OR mixed integer programming www

  • coinor-libcbc3

    Bookworm:(2.10.8+ds1-1) Bullseye:(2.10.5+ds1-3) Coin-or branch-and-cut mixed integer programming solver (shared libraries) www

  • coinor-libcgl1

    Bookworm:(0.60.3+repack1-4) Bullseye:(0.60.3+repack1-2) COIN-OR Cut Generation Library www

  • coinor-libclp1

    Bookworm:(1.17.6-3) Bullseye:(1.17.5+repack1-1) Coin-or linear programming solver (shared libraries) www

  • coinor-libcoinutils3v5

    Bookworm:(2.11.4+repack1-2) Bullseye:(2.11.4+repack1-1) Coin-or collection of utility classes (binaries and libraries) www

  • coinor-libflopc++0

    Bookworm & Bullseye:(1.0.6-3.1+b2) Formulation of Linear Optimization Problems in C++ www

  • coinor-libosi1v5

    Bookworm & Bullseye:(0.108.6+repack1-2) COIN-OR Open Solver Interface www

  • coinor-libsymphony3

    Bookworm:(5.6.17+dfsg-1) Bullseye:(5.6.16+repack1-3) COIN-OR solver for mixed-integer linear programs (shared libraries) www

  • coinor-libvol1

    Bookworm & Bullseye:(1.5.4-4) Coin-or linear programming solver (libraries) www

  • coinor-symphony

    Bookworm:(5.6.17+dfsg-1) Bullseye:(5.6.16+repack1-3) COIN-OR solver for mixed-integer linear programs www

  • comet-ms

    Bookworm & Bullseye:(2019015+cleaned1-3) Tandem mass spectrometry (MS/MS) search engine www

  • concavity

    Bookworm & Bullseye:(0.1+dfsg.1-5) predictor of protein ligand binding sites from structure and conservation www

  • conda-package-handling

    Bookworm:(2.0.1-2) Bullseye:(1.7.2-2+deb11u1) create and extract conda packages of various formats www

  • connectome-workbench

    Bookworm:(1.5.0-2) Bullseye:(1.5.0-1) brain visualization, analysis and discovery tool www

  • conservation-code

    Bookworm & Bullseye:(20110309.0-8) protein sequence conservation scoring tool www

  • covtobed

    Bookworm:(1.3.5+dfsg-1+b1) Bullseye:(1.2.0+dfsg-1+b2) convert the coverage track from a BAM file into a BED file www

  • covtobed-examples

    Bookworm:(1.3.5+dfsg-1) Bullseye:(1.2.0+dfsg-1) example data and scripts for mindthegap www

  • cp2k

    Bookworm:(2023.1-2) Bullseye:(8.1-9) Ab Initio Molecular Dynamics www

  • cp2k-data

    Bookworm:(2023.1-2) Bullseye:(8.1-9) Ab Initio Molecular Dynamics (data files) www

  • cpl-plugin-amber

    Bookworm:(4.4.3+dfsg-1+b1) Bullseye:(4.4.0+dfsg-4) ESO data reduction pipeline for the AMBER instrument www

  • cpl-plugin-amber-calib

    Bookworm:(4.4.3+dfsg-1) Bullseye:(4.4.0+dfsg-4) ESO data reduction pipeline calibration data downloader for AMBER www

  • cpl-plugin-fors

    Bookworm:(5.5.7+dfsg-2+b1) Bullseye:(5.5.6+dfsg-4) ESO data reduction pipeline for the FORS1/2 instruments www

  • cpl-plugin-fors-calib

    Bookworm:(5.5.7+dfsg-2) Bullseye:(5.5.6+dfsg-4) ESO data reduction pipeline calibration data downloader for FORS2 www

  • cpl-plugin-giraf

    Bookworm:(2.16.10+dfsg-1+b1) Bullseye:(2.16.7+dfsg-4) ESO data reduction pipeline for the GIRAFFE instrument www

  • cpl-plugin-giraf-calib

    Bookworm:(2.16.10+dfsg-1) Bullseye:(2.16.7+dfsg-4) ESO data reduction pipeline calibration data downloader for GIRAFFE www

  • cpl-plugin-hawki

    Bookworm:(2.4.11+dfsg-1) Bullseye:(2.4.8+dfsg-4) ESO data reduction pipeline for the HAWK-I instrument www

  • cpl-plugin-hawki-calib

    Bookworm:(2.4.11+dfsg-1) Bullseye:(2.4.8+dfsg-4) ESO data reduction pipeline calibration data downloader for HAWK-I www

  • cpl-plugin-kmos

    Bookworm & Bullseye:(2.1.0+dfsg-1) ESO data reduction pipeline for the KMOS instrument www

  • cpl-plugin-kmos-calib

    Bookworm & Bullseye:(2.1.0+dfsg-1) ESO data reduction pipeline calibration data downloader for KMOS www

  • cpl-plugin-muse

    Bookworm:(2.8.7+dfsg-3) Bullseye:(2.8.3+dfsg-4) ESO data reduction pipeline for the MUSE instrument www

  • cpl-plugin-muse-calib

    Bookworm:(2.8.7+dfsg-3) Bullseye:(2.8.3+dfsg-4) ESO data reduction pipeline calibration data downloader for MUSE www

  • cpl-plugin-naco

    Bookworm:(4.4.11+dfsg-1) Bullseye:(4.4.9+dfsg-4) ESO data reduction pipeline for the NaCo instrument www

  • cpl-plugin-naco-calib

    Bookworm:(4.4.11+dfsg-1) Bullseye:(4.4.9+dfsg-4) ESO data reduction pipeline NaCo calibration data downloader www

  • cpl-plugin-uves

    Bookworm:(6.1.8+dfsg-2+b1) Bullseye:(6.1.3+dfsg-5) ESO data reduction pipeline for the UVES instrument www

  • cpl-plugin-uves-calib

    Bookworm:(6.1.8+dfsg-2) Bullseye:(6.1.3+dfsg-5) ESO data reduction pipeline calibration data downloader for UVES www

  • cpl-plugin-vimos

    Bookworm:(4.1.7+dfsg-2+b1) Bullseye:(4.1.1+dfsg-4) ESO data reduction pipeline for the VIMOS instrument www

  • cpl-plugin-vimos-calib

    Bookworm:(4.1.7+dfsg-2) Bullseye:(4.1.1+dfsg-4) ESO data reduction pipeline calibration data downloader for VIMOS www

  • cpl-plugin-visir

    Bookworm:(4.4.2+dfsg-1) Bullseye:(4.3.10+dfsg-5) ESO data reduction pipeline for the VISIR instrument www

  • cpl-plugin-visir-calib

    Bookworm:(4.4.2+dfsg-1) Bullseye:(4.3.10+dfsg-5) ESO data reduction pipeline calibration data downloader for VISIR www

  • cpl-plugin-xshoo

    Bookworm:(3.5.3+dfsg-1+b2) Bullseye:(3.5.0+dfsg-4) ESO data reduction pipeline for the XSHOOTER instrument www

  • cpl-plugin-xshoo-calib

    Bookworm:(3.5.3+dfsg-1) Bullseye:(3.5.0+dfsg-4) ESO data reduction pipeline calibration data downloader for XSHOOTER www

  • cpuinfo

    Bookworm:(0.0~git20220617.082deff-1) Bullseye:(0.0~git20200612.63b2545-2) CPU INFOrmation library (binary utilities) www

  • crac

    Bookworm:(2.5.2+dfsg-5) Bullseye:(2.5.2+dfsg-4) integrated RNA-Seq read analysis www

  • critterding

    Bookworm & Bullseye:(1.0-beta12.1-1.3) Evolving Artificial Life www

  • ctdconverter

    Bookworm:(2.1-5) Bullseye:(2.1-3) Convert CTD files into Galaxy tool and CWL CommandLineTool files www

  • ctsim

    Bookworm:(6.0.2-6+b1) Bullseye:(6.0.2-5) Computed tomography simulator www

  • ctsim-help

    Bookworm:(6.0.2-6) Bullseye:(6.0.2-5) Online help file for CTSim www

  • cutadapt

    Bookworm:(4.2-1) Bullseye:(3.2-2) Clean biological sequences from high-throughput sequencing reads www

  • cutesv

    Bookworm:(2.0.2-1) comprehensive discovery of structural variations of genomic sequences www

  • cwl-upgrader

    Bookworm:(1.2.4-1) Common Workflow Language standalone document upgrader www

  • cwlformat

    Bookworm:(2022.02.18-2) Bullseye:(2021.01.05-1) code formatter for Common Workflow Language www

  • cwltool

    Bookworm:(3.1.20230209161050-1) Bullseye:(3.0.20210124104916-3+deb11u1) Common Workflow Language reference implementation www
  • Back to top

  • D

  • daligner

    Bookworm:(1.0+git20221215.bd26967-1) Bullseye:(1.0+git20200727.ed40ce5-3) local alignment discovery between long nucleotide sequencing reads www

  • damapper

    Bookworm:(0.0+git20210330.ab45103-1) Bullseye:(0.0+git20200322.b2c9d7f-3) long read to reference genome mapping tool www

  • dans-gdal-scripts

    Bookworm:(0.24-3+b8) Bullseye:(0.24-3+b4) GDAL contributed tools by Geographic Information Network of Alaska www

  • darknet

    Bookworm:(0.0.0+git20180914.61c9d02e-2+b7) Bullseye:(0.0.0+git20180914.61c9d02e-2+b5) Open Source Neural Networks in C www

  • dascrubber

    Bookworm:(1.1-4) Bullseye:(1.1-2) alignment-based scrubbing pipeline for DNA sequencing reads www

  • datalad

    Bookworm:(0.18.1-2) Bullseye:(0.14.0-1) data files management and distribution platform www

  • datalad-container

    Bookworm:(1.1.9-1) Bullseye:(1.1.2-1) DataLad extension for working with containerized environments www

  • dawg

    Bookworm:(1.2-4) Bullseye:(1.2-3) simulate the evolution of recombinant DNA sequences www

  • dazzdb

    Bookworm:(1.0+git20221215.aad3a46-1) Bullseye:(1.0+git20201103.8d98c37-1+deb11u1) manage nucleotide sequencing read data www

  • dcl-f77

    Bookworm:(7.5.1-1) Bullseye:(7.4.1-1) GFD-DENNOU Club Library (DCL) - FORTRAN77 version www

  • dcm2niix

    Bookworm:(1.0.20220720-1+deb12u1) Bullseye:(1.0.20201102-1) next generation DICOM to NIfTI converter www

  • dcmtk

    Bookworm:(3.6.7-9~deb12u1) Bullseye:(3.6.5-1) OFFIS DICOM toolkit command line utilities www

  • debian-astro-logo

    Bookworm:(4.0) Bullseye:(3.0) Debian Astronomy Pure Blends Logo www

  • deepnano

    Bookworm:(0.0+git20170813.e8a621e-4) Bullseye:(0.0+git20170813.e8a621e-3.1+b9) alternative basecaller for MinION reads of genomic sequences www

  • deepnano-data

    Bookworm:(0.0+git20170813.e8a621e-4) Bullseye:(0.0+git20170813.e8a621e-3.1) alternative basecaller for MinION reads of genomic sequences (data) www

  • delly

    Bookworm:(1.1.6-1) Bullseye:(0.8.7-1) Structural variant discovery by read analysis www

  • density-fitness

    Bookworm:(1.0.8-4) Bullseye:(1.0.0-2) Calculates per-residue electron density scores www

  • dextractor

    Bookworm:(1.0-6) Bullseye:(1.0-4) (d)extractor and compression command library www

  • dh-r

    Bookworm:(20230121) Bullseye:(20210303) Debian helper tools for packaging R libraries

  • dialign

    Bookworm & Bullseye:(2.2.1-11) Segment-based multiple sequence alignment www

  • dialign-tx

    Bookworm:(1.0.2-14) Bullseye:(1.0.2-13) Segment-based multiple sequence alignment www

  • dialign-tx-data

    Bookworm:(1.0.2-14) Bullseye:(1.0.2-13) Segment-based multiple sequence alignment (data files) www

  • diamond-aligner

    Bookworm & Bullseye:(0.9.30-3) accelerated BLAST compatible local sequence aligner www

  • dicomnifti

    Bookworm:(2.33.1-5) Bullseye:(2.33.1-2) converts DICOM files into the NIfTI format www

  • dicompyler

    Bookworm & Bullseye:(0.4.2.0+git20200106.2643e0e-1) radiation therapy research platform www

  • dimbl

    Bookworm & Bullseye:(0.15-2.1+b2) Distributed Memory Based Learner www

  • dindel

    Bookworm:(1.01-wu1-3+dfsg-2+b1) Bullseye:(1.01-wu1-3+dfsg-2) determines indel calls from short-read data www

  • disulfinder

    Bookworm:(1.2.11-12) Bullseye:(1.2.11-10) cysteines disulfide bonding state and connectivity predictor www

  • disulfinder-data

    Bookworm:(1.2.11-12) Bullseye:(1.2.11-10) data files for predictor of disulfide bonds in proteins www

  • dlmodelbox

    Bookworm & Bullseye:(1.1.1-1) Swiss Army Knife of Deep Learning Models www

  • dmrgpp

    Bookworm:(6.02-3) Density matrix renormalization group algorithm www

  • dnaclust

    Bookworm:(3-7+b2) Bullseye:(3-7+b1) tool for clustering millions of short DNA sequences www

  • dnapi

    Bookworm & Bullseye:(1.1-3) adapter prediction for small RNA sequencing - utils www

  • dnarrange

    Bookworm:(1.5.3-1) Method to find rearrangements in long DNA reads relative to a genome seq www

  • dotter

    Bookworm:(4.44.1+dfsg-7+b1) Bullseye:(4.44.1+dfsg-6+b1) detailed comparison of two genomic sequences www

  • dotur

    Bookworm & Bullseye:(1.53-2) distance based OTU and richness estimation www

  • dozzaqueux

    Bookworm & Bullseye:(3.51-2.1) simulator for chemical mixtures www

  • dozzaqueux-data

    Bookworm & Bullseye:(3.51-2.1) databases for chemical mixtures www

  • dpuser

    Bookworm:(4.1+dfsg-1+b1) Bullseye:(4.0+dfsg-3+b2) Interactive language for handling numbers, strings, and matrices www

  • drawxtl

    Bookworm:(5.5-6) Bullseye:(5.5-5) crystal structure viewer www

  • drop-seq-testdata

    Bookworm:(2.5.2+dfsg-1) Bullseye:(2.4.0+dfsg-6) analyzing Drop-seq data (testdata) www

  • drop-seq-tools

    Bookworm:(2.5.2+dfsg-1) Bullseye:(2.4.0+dfsg-6) analyzing Drop-seq data www

  • drs4eb

    Bookworm:(5.0.6+git20211217+ds-2+b1) DRS4 Evaluation Board software www

  • drslib

    Bookworm:(0.3.1.p3-2.1) Bullseye:(0.3.1.p3-2) Command-line tools for the Data Reference Syntax library www

  • dsdp

    Bookworm:(5.8-10) Bullseye:(5.8-9.4) Software for Semidefinite Programming www

  • dssp

    Bookworm:(4.2.2-2) Bullseye:(4.0.0-2) protein secondary structure assignment based on 3D structure www

  • dwgsim

    Bookworm:(0.1.14-2) Bullseye:(0.1.12-4) short sequencing read simulator www

  • dx

    Bookworm:(1:4.4.4-15) Bullseye:(1:4.4.4-13) OpenDX (IBM Visualization Data Explorer) - main package www

  • dxf2gcode

    Bookworm:(20191025-2) Bullseye:(20170925-4) prepares drawings of parts for automatic machine tools www

  • dxsamples

    Bookworm & Bullseye:(4.4.0-5) Sample programs for the OpenDX Data Explorer www

  • dyssol

    Bookworm:(1.1.1+ds1-1) Tool for dynamic flowsheet simulation. Command line tool www

  • dyssol-data

    Bookworm:(1.1.1+ds1-1) Tool for dynamic flowsheet simulation. Data files www

  • dyssol-gui

    Bookworm:(1.1.1+ds1-1) Tool for dynamic flowsheet simulation. GUI www
  • Back to top

  • E

  • e-mem

    Bookworm:(1.0.1-5) Bullseye:(1.0.1-4) Efficient computation of Maximal Exact Matches for very large genomes www

  • e00compr

    Bookworm:(1.0.1-7) Bullseye:(1.0.1-6) Program to read/write Arcinfo compressed E00 files www

  • ea-utils

    Bookworm:(1.1.2+dfsg-9+b1) Bullseye:(1.1.2+dfsg-6) command-line tools for processing biological sequencing data www

  • easychem

    Bookworm & Bullseye:(0.6-9) Draw high-quality molecules and 2D chemical formulas www

  • ecaccess

    Bookworm & Bullseye:(4.0.1-1.1) clients to access ECMWF facilities www

  • ecflow-client

    Bookworm:(5.9.2-1+b1) Bullseye:(5.6.0-1+b1) Client tools for Meteorological workflow www

  • ecflow-server

    Bookworm:(5.9.2-1+b1) Bullseye:(5.6.0-1+b1) Meteorological workflow controller - server www

  • ecopcr

    Bookworm:(1.0.1+dfsg-4) Bullseye:(1.0.1+dfsg-2) estimate PCR barcode primers quality www

  • edfbrowser

    Bookworm:(2.00+dfsg-1) Bullseye:(1.81+dfsg-1) viewer for biosignal storage files such as bdf and edf www

  • edlib-aligner

    Bookworm:(1.2.7-4+b1) Bullseye:(1.2.6-1) edlib sequence alignment tool using edit distance www

  • edtsurf

    Bookworm & Bullseye:(0.2009-10) triangulated mesh surfaces for protein structures www

  • eigensoft

    Bookworm:(8.0.0+dfsg-1) Bullseye:(7.2.1+dfsg-2) reduction of population bias for genetic analyses www

  • elk-lapw

    Bookworm:(8.4.30-1) Bullseye:(6.3.2-2) All-Electron Density-Functional Electronic Structure Code www

  • elki

    Bookworm & Bullseye:(0.7.1-10.1) Data mining algorithm development framework www

  • elki-dev

    Bookworm & Bullseye:(0.7.1-10.1) Data mining algorithm development framework - development files www

  • elph

    Bookworm & Bullseye:(1.0.1-5) DNA/protein sequence motif finder www

  • embassy-domainatrix

    Bookworm & Bullseye:(0.1.660-4) Extra EMBOSS commands to handle domain classification file www

  • embassy-domalign

    Bookworm & Bullseye:(0.1.660-4) Extra EMBOSS commands for protein domain alignment www

  • embassy-domsearch

    Bookworm & Bullseye:(1:0.1.660-3) Extra EMBOSS commands to search for protein domains www

  • emboss

    Bookworm:(6.6.0+dfsg-12) Bullseye:(6.6.0+dfsg-9) European molecular biology open software suite www

  • emboss-data

    Bookworm:(6.6.0+dfsg-12) Bullseye:(6.6.0+dfsg-9) data files for the EMBOSS package www

  • emboss-explorer

    Bookworm & Bullseye:(2.2.0-11) web-based GUI to EMBOSS www

  • emboss-lib

    Bookworm:(6.6.0+dfsg-12) Bullseye:(6.6.0+dfsg-9) EMBOSS Libraries www

  • emmax

    Bookworm:(0~beta.20100307-3) Bullseye:(0~beta.20100307-1) genetic mapping considering population structure www

  • engauge-digitizer

    Bookworm & Bullseye:(12.1+ds.1-1) interactively extracts numbers from bitmap graphs or maps www

  • ent

    Bookworm & Bullseye:(1.2debian-3) pseudorandom number sequence test program www

  • epigrass

    Bookworm:(3.0.0+dfsg-1+b1) Bullseye:(3.0.0+dfsg-1) scientific tool for simulations and scenario analysis in network epidemiology www

  • epsilon-bin

    Bookworm & Bullseye:(0.9.2+dfsg-5) Library for wavelet image compression - tools www

  • ergo

    Bookworm & Bullseye:(3.8-1) Quantum chemistry program for large-scale calculations www

  • ergo-data

    Bookworm & Bullseye:(3.8-1) Quantum chemistry program for large-scale calculations - data package www

  • eso-midas

    Bookworm:(22.02pl1.0-2) Bullseye:(19.02pl1.1-6) European Southern Observatory Munich Image Data Analysis System www

  • eso-midas-testdata

    Bookworm:(22.02pl1.0-2) Bullseye:(19.02pl1.1-6) Test data files for ESO-MIDAS www

  • eso-pipelines

    Bookworm & Bullseye:(1.3) ESO VLT Instrument pipeline collection www

  • esorex

    Bookworm:(3.13.6+ds-1) Bullseye:(3.13.3+ds-1) Execution Tool for European Southern Observatory pipelines www

  • estscan

    Bookworm:(3.0.3-6+b3) Bullseye:(3.0.3-5) ORF-independent detector of coding DNA sequences www

  • esys-particle

    Bookworm:(2.3.5+dfsg2-6+b1) Bullseye:(2.3.5+dfsg2-1) Software for particle-based numerical modelling (MPI version) www

  • etsf-io

    Bookworm & Bullseye:(1.0.4-5) Binary tools to check, merge and read ETSF files www

  • examl

    Bookworm:(3.0.22-3) Bullseye:(3.0.22-1) Exascale Maximum Likelihood (ExaML) code for phylogenetic inference www

  • exonerate

    Bookworm & Bullseye:(2.4.0-5) generic tool for pairwise sequence comparison www

  • expeyes

    Bookworm & Bullseye:(4.8.8+repack-2) hardware & software framework for developing science experiments www

  • expeyes-clib

    Bookworm & Bullseye:(4.8.8+repack-2) hardware & software framework for developing science experiments www

  • eye

    Bookworm:(22.1201.1601~ds-1) Bullseye:(20.1027.2307~ds-1) semantic web reasoning engine www

  • eyes17

    Bookworm & Bullseye:(4.8.8+repack-2) hardware & software framework for developing science experiments www

  • eyes17-manuals-en

    Bookworm:(5.1.2+repack-1) Eyes17 User Manuals (English version) www

  • eyes17-manuals-es

    Bookworm:(5.1.2+repack-1) Eyes17 User Manuals (Spanish version) www

  • eyes17-manuals-fr

    Bookworm:(5.1.2+repack-1) Eyes17 User Manuals (French version) www

  • eyes17-manuals-ml

    Bookworm:(5.1.2+repack-1) Eyes17 User Manuals (Malayalam version) www
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  • F

  • fact++

    Bookworm & Bullseye:(1.6.5~dfsg-3) description logic reasoner for the semantic web www

  • fast5

    Bookworm:(0.6.5-7) Bullseye:(0.6.5-4) utilities for manipulating Oxford Nanopore Fast5 files www

  • fasta3

    Bookworm:(36.3.8i.14-Nov-2020-1) Bullseye:(36.3.8h.2020-02-11-3) tools for searching collections of biological sequences www

  • fastahack

    Bookworm:(1.0.0+dfsg-10) Bullseye:(1.0.0+dfsg-7) utility for indexing and sequence extraction from FASTA files www

  • fastani

    Bookworm:(1.33-2+b1) Fast alignment-free computation of whole-genome Average Nucleotide Identity www

  • fastaq

    Bookworm:(3.17.0-5) Bullseye:(3.17.0-3) FASTA and FASTQ file manipulation tools www

  • fastdnaml

    Bookworm & Bullseye:(1.2.2-15) Tool for construction of phylogenetic trees of DNA sequences www

  • fastlink

    Bookworm & Bullseye:(4.1P-fix100+dfsg-4) faster version of pedigree programs of Linkage www

  • fastml

    Bookworm & Bullseye:(3.11-3) maximum likelihood ancestral amino-acid sequence reconstruction www

  • fastp

    Bookworm:(0.23.2+dfsg-2) Bullseye:(0.20.1+dfsg-1) Ultra-fast all-in-one FASTQ preprocessor www

  • fastq-pair

    Bookworm:(1.0-3) Rewrites paired end fastq so all reads have a mate to separate out singletons www

  • fastqc

    Bookworm:(0.11.9+dfsg-6) Bullseye:(0.11.9+dfsg-4) quality control for high throughput sequence data www

  • fastqtl

    Bookworm:(2.184+v7+dfsg-3) Bullseye:(2.184+dfsg-7+b4) Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes www

  • fasttext

    Bookworm:(0.9.2+ds-1+b1) Bullseye:(0.9.2-3+b1) Efficient learning of word representations and sentence classification library www

  • fasttree

    Bookworm & Bullseye:(2.1.11-2) phylogenetic trees from alignments of nucleotide or protein sequences www

  • fastx-toolkit

    Bookworm & Bullseye:(0.0.14-6) FASTQ/A short nucleotide reads pre-processing tools www

  • feedgnuplot

    Bookworm:(1.61-1) Bullseye:(1.57-1) Pipe-oriented frontend to Gnuplot www

  • feff85exafs

    Bookworm:(0.2+dfsg-2) Open Source theoretical EXAFS calculations www

  • ffindex

    Bookworm:(0.9.9.9-6) Bullseye:(0.9.9.9-4) simple index/database for huge amounts of small files www

  • figtree

    Bookworm & Bullseye:(1.4.4-5) graphical phylogenetic tree viewer www

  • filo

    Bookworm & Bullseye:(1.1.0-3) FILe and stream Operations www

  • filtlong

    Bookworm:(0.2.1-3) Bullseye:(0.2.0-2) quality filtering tool for long reads of genome sequences www

  • filtlong-data

    Bookworm:(0.2.1-3) Bullseye:(0.2.0-2) quality filtering tool for long reads of genome sequences (testdata) www

  • finalcif

    Bookworm:(113+dfsg-2) editor for Crystallographic Information Format www

  • fiona

    Bookworm:(1.9.0-1) Bullseye:(1.8.18-1+b1) Command line tool for reading/writing vector geospatial data www

  • firm-phoenix-ware

    Bookworm:(4.7.5+repack-2) Bullseye:(4.7.5+repack-1) firmware necessary for boxes issued by project PHOENIX www

  • fitgcp

    Bookworm:(0.0.20150429-5) Bullseye:(0.0.20150429-4) fitting genome coverage distributions with mixture models www

  • fitscut

    Bookworm:(1.4.4-5+b3) Bullseye:(1.4.4-5+b2) Extract cutouts from FITS image format files www

  • fitsh

    Bookworm & Bullseye:(0.9.4-1) Software package for astronomical image processing www

  • fitspng

    Bookworm:(2.0-1+b1) Bullseye:(1.4-1+b2) FITS to PNG converter www

  • fitsverify

    Bookworm:(4.20-4+b1) Bullseye:(4.20-3) FITS File Format-Verification Tool www

  • fityk

    Bookworm:(1.3.2-2+b1) Bullseye:(1.3.1-6) general-purpose nonlinear curve fitting and data analysis www

  • flash

    Bookworm & Bullseye:(1.2.11-2) Fast Length Adjustment of SHort reads www

  • flexbar

    Bookworm:(1:3.5.0-5) Bullseye:(1:3.5.0-3) flexible barcode and adapter removal for sequencing platforms www

  • flexpart

    Bookworm:(9.02-25) Bullseye:(9.02-23) Particle Dispersion model for tracing air transport phenomena www

  • flextra

    Bookworm:(5.0-16) Bullseye:(5.0-14) Trajectory model for tracing air transport phenomena www

  • fml-asm

    Bookworm & Bullseye:(0.1+git20190320.b499514-1+rpi1) tool for assembling Illumina short reads in small regions www

  • foma

    Bookworm:(1:0.10.0+s311-1) Bullseye:(1:0.9.18+r243-8) Tools for constructing various finite-state automata www

  • foma-bin

    Bookworm:(1:0.10.0+s311-1) Bullseye:(1:0.9.18+r243-8) Transitional package for foma www

  • form

    Bookworm:(4.3.0+git20230104+ds-1) Bullseye:(4.2.1+git20200217-1) Symbolic manipulation system www

  • fractalnow

    Bookworm:(0.8.2-5) Bullseye:(0.8.2-4) Fast, advanced fractal generator www

  • free42-nologo

    Bookworm:(3.0.17+ds-1) Bullseye:(2.5.25+ds-1) Free42 is a re-implementation of the HP-42S calculator www

  • freebayes

    Bookworm:(1.3.6-2) Bullseye:(1.3.5-1) Bayesian haplotype-based polymorphism discovery and genotyping www

  • freecad

    Bookworm:(0.20.2+dfsg1-4+rpi1) Bullseye:(0.19.1+dfsg1-2+deb11u1) Extensible Open Source CAx program www

  • freecad-common

    Bookworm:(0.20.2+dfsg1-4+rpi1) Bullseye:(0.19.1+dfsg1-2+deb11u1) Extensible Open Source CAx program - common files www

  • freecad-python3

    Bookworm:(0.20.2+dfsg1-4+rpi1) Bullseye:(0.19.1+dfsg1-2+deb11u1) Extensible Open Source CAx program - Python 3 binaries www

  • freecontact

    Bookworm:(1.0.21-13) Bullseye:(1.0.21-9) fast protein contact predictor www

  • freesasa

    Bookworm:(2.1.2-1) Solvent Accessible Surface Area of biomolecules www

  • frog

    Bookworm:(0.20-2+b3) Bullseye:(0.20-2+b1) tagger and parser for natural languages (runtime) www

  • frogdata

    Bookworm:(0.18-2) Bullseye:(0.18-1) Data files for Frog www

  • fsa

    Bookworm & Bullseye:(1.15.9+dfsg-6) Fast Statistical Alignment of protein, RNA or DNA sequences www

  • fsl

    Bookworm & Bullseye:(5.0.8-6) transitional dummy package www

  • fsl-core

    Bookworm & Bullseye:(5.0.8-6) metapackage for the latest version of FSL www

  • ftools-fv

    Bookworm:(5.5.2+dfsg-2) Bullseye:(5.5.2+dfsg-1) Tool for viewing and editing FITS format files www

  • ftools-pow

    Bookworm:(5.5.2+dfsg-2) Bullseye:(5.5.2+dfsg-1) Curve plotting and image display interface tool www

  • funtools

    Bookworm:(1.4.8-1) Bullseye:(1.4.7-4) Minimal buy-in FITS utility package www

  • fxt-tools

    Bookworm:(0.3.13-2) Bullseye:(0.3.13-1) Multithreaded tracing library www
  • Back to top

  • G

  • g3data

    Bookworm:(1:1.5.3-3.1) Bullseye:(1:1.5.3-3+b1) extract data from scanned graphs www

  • gabedit

    Bookworm:(2.5.1+ds-1+b1) Bullseye:(2.5.1~20200828-1) graphical user interface to Ab Initio packages www

  • galileo

    Bookworm:(0.5.1-9.1) Bullseye:(0.5.1-7) Utility to securely synchronize a Fitbit device with the Fitbit web service www

  • galileo-daemon

    Bookworm:(0.5.1-9.1) Bullseye:(0.5.1-7) Utility to securely synchronize a Fitbit device - daemon www

  • gamgi

    Bookworm:(0.17.5-1) Bullseye:(0.17.3-3) General Atomistic Modelling Graphic Interface (GAMGI) www

  • gamgi-data

    Bookworm:(0.17.5-1) Bullseye:(0.17.3-3) General Atomistic Modelling Graphic Interface (data) www

  • garli

    Bookworm:(2.1-7) Bullseye:(2.1-4) phylogenetic analysis of molecular sequence data using maximum-likelihood www

  • garli-examples

    Bookworm:(2.1-7) Bullseye:(2.1-4) phylogenetic analysis of molecular sequence data (examples) www

  • garli-mpi

    Bookworm:(2.1-7) Bullseye:(2.1-4) phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI) www

  • garlic

    Bookworm & Bullseye:(1.6-3) visualization program for biomolecules www

  • gasic

    Bookworm:(0.0.r19-8) Bullseye:(0.0.r19-7) genome abundance similarity correction www

  • gasic-examples

    Bookworm:(0.0.r19-8) Bullseye:(0.0.r19-7) genome abundance similarity correction (example data) www

  • gatb-core-testdata

    Bookworm:(1.4.2+dfsg-11) Bullseye:(1.4.2+dfsg-6) Genome Analysis Toolbox with de-Bruijn graph (test data) www

  • gausssum

    Bookworm & Bullseye:(3.0.2-2) parse and display Gaussian, GAMESS, and etc's output www

  • gbrowse

    Bookworm:(2.56+dfsg-11) Bullseye:(2.56+dfsg-8) GMOD Generic Genome Browser www

  • gbrowse-calign

    Bookworm:(2.56+dfsg-11+b1) Bullseye:(2.56+dfsg-8+b1) CAlign helper www

  • gbrowse-data

    Bookworm:(2.56+dfsg-11) Bullseye:(2.56+dfsg-8) Sample data to use GBrowse www

  • gbutils

    Bookworm:(6.3-1) Bullseye:(6.0-1) utilities for command line econometrics www

  • gchempaint

    Bookworm:(0.14.17-6.1) Bullseye:(0.14.17-6) 2D chemical structures editor for the GNOME2 desktop www

  • gcrystal

    Bookworm:(0.14.17-6.1) Bullseye:(0.14.17-6) lightweight crystal structures visualizer www

  • gcu-bin

    Bookworm:(0.14.17-6.1) Bullseye:(0.14.17-6) GNOME chemistry utils (helper applications) www

  • gcx

    Bookworm & Bullseye:(1.3-1.1+b2) astronomical image processing and photometry gtk+ application www

  • gdal-bin

    Bookworm:(3.6.2+dfsg-1+b1) Bullseye:(3.2.2+dfsg-2+deb11u2) Geospatial Data Abstraction Library - Utility programs www

  • gdal-data

    Bookworm:(3.6.2+dfsg-1) Bullseye:(3.2.2+dfsg-2+deb11u2) Geospatial Data Abstraction Library - Data files www

  • gdal-plugins

    Bookworm:(3.6.2+dfsg-1+b1) Geospatial Data Abstraction Library - Plugins www

  • gdis

    Bookworm & Bullseye:(0.90-6) molecular and crystal model viewer www

  • gdis-data

    Bookworm & Bullseye:(0.90-6) molecular and crystal model viewer (data files) www

  • gdl-astrolib

    Bookworm:(2022.06.02+dfsg-1) Bullseye:(2020.10.29+dfsg-3) Low-level astronomy software for GDL www

  • gdl-coyote

    Bookworm:(2022.04.12-1) Bullseye:(2019.08.19-1) GDL library from D. Fannings IDL courses www

  • gdl-mpfit

    Bookworm & Bullseye:(1.85+2017.01.03-4) Robust non-linear least squares curve fitting for GDL www

  • gdpc

    Bookworm & Bullseye:(2.2.5-11) visualiser of molecular dynamic simulations www

  • gdpc-examples

    Bookworm & Bullseye:(2.2.5-11) example files for the gdpc program www

  • gelemental

    Bookworm:(2.0.2-1) Bullseye:(2.0.0-1) Periodic Table viewer www

  • gemma

    Bookworm:(0.98.5+dfsg-2) Bullseye:(0.98.4+dfsg-4) Genome-wide Efficient Mixed Model Association www

  • gemma-doc

    Bookworm:(0.98.5+dfsg-2) Bullseye:(0.98.4+dfsg-4) Example folder for GEMMA www

  • gemmi

    Bookworm:(0.5.7+ds-2+b1) library for structural biology - executable www

  • genometester

    Bookworm & Bullseye:(4.0+git20200511.91cecb5+dfsg-1) toolkit for performing set operations on k-mer lists www

  • genomethreader

    Bookworm:(1.7.3+dfsg-7) Bullseye:(1.7.3+dfsg-5) software tool to compute gene structure predictions www

  • genometools

    Bookworm:(1.6.2+ds-3) Bullseye:(1.6.1+ds-3) versatile genome analysis toolkit www

  • genometools-common

    Bookworm:(1.6.2+ds-3) Bullseye:(1.6.1+ds-3) shared data files for GenomeTools www

  • gentle

    Bookworm:(1.9+cvs20100605+dfsg1-10+b1) Bullseye:(1.9+cvs20100605+dfsg1-9) suite to plan genetic cloning www

  • geographiclib-tools

    Bookworm:(2.1.2-1) Bullseye:(1.51-1) C++ library to solve some geodesic problems -- tools www

  • geotiff-bin

    Bookworm:(1.7.1-2+b1) Bullseye:(1.6.0-1) GeoTIFF (geografic enabled TIFF) library -- tools www

  • gerris

    Bookworm & Bullseye:(20131206+dfsg-19+b7) Fluid Flow Solver www

  • getdata

    Bookworm & Bullseye:(0.2-4) management of external databases www

  • gff2aplot

    Bookworm:(2.0-14) Bullseye:(2.0-13) pair-wise alignment-plots for genomic sequences in PostScript www

  • gff2ps

    Bookworm:(0.98l-6) Bullseye:(0.98l-4) produces PostScript graphical output from GFF-files www

  • gffread

    Bookworm:(0.12.7-3) Bullseye:(0.12.1-4) GFF/GTF format conversions, region filtering, FASTA sequence extraction www

  • gfsview

    Bookworm & Bullseye:(20121130+dfsg-7) graphical viewer for Gerris simulation files www

  • gfsview-batch

    Bookworm & Bullseye:(20121130+dfsg-7) batch-version of viewer for Gerris simulation files www

  • gftl-dev

    Bookworm & Bullseye:(1.3.0+is-really-1.2.7-1) Containers and iterators for Fortran www

  • gftl-shared-dev

    Bookworm & Bullseye:(1.0.7-2) Common gFTL containers of Fortran intrinsic types www

  • ggd-utils

    Bookworm:(1.0.0+ds-1) Bullseye:(0.0.7+ds-3) programs for use in ggd www

  • ghkl

    Bookworm:(5.0.0.3001-1+b1) Bullseye:(5.0.0.2661-1+b1) diffractometer computation control application www

  • ghmm

    Bookworm & Bullseye:(0.9~rc3-4) General Hidden-Markov-Model library - tools www

  • giella-core

    Bookworm & Bullseye:(0.1.1~r129227+svn121148-2.1) GTCORE files for building Giellatekno language packages www

  • ginga

    Bookworm:(4.0.1-1) Bullseye:(3.1.0-1) Astronomical image viewer www

  • glam2

    Bookworm & Bullseye:(1064-9) gapped protein motifs from unaligned sequences www

  • gliese

    Bookworm:(3.0.95-3) Bullseye:(3.0.95-2) stellar data set from the Third Catalogue of Nearby Stars www

  • glueviz

    Bookworm:(1.0.1+dfsg-2) Bullseye:(1.0.1+dfsg-1) Linked data visualization www

  • gmap

    Bookworm:(2021-12-17+ds-3) Bullseye:(2021-02-22+ds-1) spliced and SNP-tolerant alignment for mRNA and short reads www

  • gmt

    Bookworm:(6.4.0+dfsg-2) Bullseye:(6.1.1+dfsg-1+b1) Generic Mapping Tools www

  • gmt-common

    Bookworm:(6.4.0+dfsg-2) Bullseye:(6.1.1+dfsg-1) Generic Mapping Tools - Architecture-independent files www

  • gmt-dcw

    Bookworm:(2.1.1-1) Bullseye:(1.1.4-3) Digital Chart of the World (DCW) for GMT www

  • gmt-gshhg

    Bookworm:(2.3.7-6) Bullseye:(2.3.7-5) Global Self-consistent Hierarchical High-resolution Geography (GSHHG) www

  • gmt-gshhg-full

    Bookworm:(2.3.7-6) Bullseye:(2.3.7-5) Full resolution coastlines for the Generic Mapping Tools www

  • gmt-gshhg-high

    Bookworm:(2.3.7-6) Bullseye:(2.3.7-5) High resolution coastlines for the Generic Mapping Tools www

  • gmt-gshhg-low

    Bookworm:(2.3.7-6) Bullseye:(2.3.7-5) Low resolution coastlines for the Generic Mapping Tools www

  • gnuastro

    Bookworm:(0.19-1+b2) Bullseye:(0.14-1) GNU Astronomy Utilities programs www

  • goby-java

    Bookworm:(3.3.1+dfsg2-9) next-generation sequencing data and results analysis tool www

  • gpaw

    Bookworm:(22.8.0-2+rpi1) Bullseye:(21.1.0-1) DFT and beyond within the projector-augmented wave method www

  • gpaw-data

    Bookworm & Bullseye:(0.9.20000-2) gpaw datasets/setups www

  • gperiodic

    Bookworm & Bullseye:(3.0.3-1) periodic table application www

  • gpx

    Bookworm & Bullseye:(2.6.8-1) Gcode to x3g conversion post processor www

  • grabix

    Bookworm:(0.1.7-4) Bullseye:(0.1.7-2) wee tool for random access into BGZF files www

  • graphlan

    Bookworm:(1.1.3-4) Bullseye:(1.1.3-2) circular representations of taxonomic and phylogenetic trees www

  • grass

    Bookworm:(8.2.1-1) Bullseye:(7.8.5-1+deb11u1) Geographic Resources Analysis Support System (GRASS GIS) www

  • grass-core

    Bookworm:(8.2.1-1) Bullseye:(7.8.5-1+deb11u1) GRASS GIS core components www

  • grass-gui

    Bookworm:(8.2.1-1) Bullseye:(7.8.5-1+deb11u1) GRASS GIS graphical user interfaces www

  • gravit

    Bookworm:(0.5.1+dfsg-6+b1) Bullseye:(0.5.1+dfsg-5) visually stunning gravity simulator www

  • gravit-data

    Bookworm:(0.5.1+dfsg-6) Bullseye:(0.5.1+dfsg-5) data files for Gravit www

  • gri

    Bookworm:(2.12.27-1.1) Bullseye:(2.12.27-1.1~deb11u1) a language for scientific illustration www

  • grinder

    Bookworm & Bullseye:(0.5.4-6) Versatile omics shotgun and amplicon sequencing read simulator www

  • gromacs-data

    Bookworm:(2022.5-2) Bullseye:(2020.6-2) GROMACS molecular dynamics sim, data and documentation www

  • gsort

    Bookworm & Bullseye:(0.1.4-3) sort genomic data www

  • gubbins

    Bookworm & Bullseye:(2.3.5-1) phylogenetic analysis of genome sequences www

  • gvb

    Bookworm & Bullseye:(1.4-1.1) visual simulator of 1 and 2-dimensional vibrations www

  • gwama

    Bookworm:(2.2.2+dfsg-5) Bullseye:(2.2.2+dfsg-4) Genome-Wide Association Meta Analysis www

  • gwyddion

    Bookworm:(2.62-1) Bullseye:(2.57-1) Scanning Probe Microscopy visualization and analysis tool www

  • gwyddion-common

    Bookworm:(2.62-1) Bullseye:(2.57-1) architecture-independent files for Gwyddion SPM analysis tool www

  • gyoto

    Bookworm:(1.4.4-8) Bullseye:(1.4.4-3) General relativistic geodesic integration and ray-tracing www

  • gyoto-bin

    Bookworm:(1.4.4-8+b3) Bullseye:(1.4.4-3+b7) General relativistic ray-tracing command-line interface www
  • Back to top

  • H

  • h5utils

    Bookworm:(1.13.2-1) Bullseye:(1.13.1-4) HDF5 files visualization tools www

  • harminv

    Bookworm:(1.4.1-4) Bullseye:(1.4.1-2) extraction of complex frequencies and amplitudes from time series www

  • harvest-tools

    Bookworm:(1.3-8+b2) Bullseye:(1.3-6) archiving and postprocessing for reference-compressed genomic multi-alignments www

  • hdf-compass

    Bookworm & Bullseye:(0.7~b8-3) viewer for HDF5 and related formats www

  • hdf5-filter-plugin

    Bookworm:(0.0~git20221111.49e3b65-4) external filters for HDF5: LZ4, BZip2, Bitshuffle www

  • hdf5-filter-plugin-blosc-serial

    Bookworm:(0.0~git20220616.9683f7d-5) blocking, shuffling and lossless compression library www

  • hdf5-filter-plugin-zfp-serial

    Bookworm:(1.1.0+git20221021-4) Compression plugin for the HDF5 library using ZFP compression www

  • hdf5-helpers

    Bookworm:(1.10.8+repack1-1) Bullseye:(1.10.6+repack-4+deb11u1) HDF5 - Helper tools www

  • hdf5-tools

    Bookworm:(1.10.8+repack1-1) Bullseye:(1.10.6+repack-4+deb11u1) HDF5 - Runtime tools www

  • herisvm

    Bookworm & Bullseye:(0.9.0-2) machine learning tools for classification algorithms www

  • heudiconv

    Bookworm:(0.11.6-1) DICOM converter with support for structure heuristics www

  • hfst

    Bookworm:(3.16.0-5) Bullseye:(3.15.1-2+b3) Helsinki Finite-State Transducer Technology www

  • hfst-ospell

    Bookworm:(0.5.3-1+b2) Bullseye:(0.5.2-1) Spell checker library and tool based on HFST www

  • hhsuite

    Bookworm:(3.3.0+ds-7) Bullseye:(3.3.0+ds-4) sensitive protein sequence searching based on HMM-HMM alignment www

  • hhsuite-data

    Bookworm:(3.3.0+ds-7) Bullseye:(3.3.0+ds-4) sensitive protein sequence searching based on HMM-HMM alignment (data) www

  • hilive

    Bookworm:(2.0a-3+b2) Bullseye:(2.0a-3+b1) realtime alignment of Illumina reads www

  • hinge

    Bookworm:(0.5.0-7+b1) Bullseye:(0.5.0-6) long read genome assembler based on hinging www

  • hisat2

    Bookworm:(2.2.1-4) Bullseye:(2.2.1-2) graph-based alignment of short nucleotide reads to many genomes www

  • hmmer

    Bookworm & Bullseye:(3.1b2-1) profile hidden Markov models for protein sequence analysis www

  • hmmer2

    Bookworm:(2.3.2+dfsg-8) Bullseye:(2.3.2+dfsg-7) profile hidden Markov models for protein sequence analysis www

  • hodie

    Bookworm:(1.5.0-2) Bullseye:(1.5.0-1) prints the date in Latin www

  • horae

    Bookworm:(071~svn537+ds1-1) Bullseye:(071~svn537-2.1) interactive graphical processing and analysis of EXAFS data www

  • hpcc

    Bookworm:(1.5.0-3) Bullseye:(1.5.0-2) HPC Challenge benchmark www

  • hts-nim-tools

    Bookworm & Bullseye:(0.2.1-1) tools biological sequences: bam-filter, count-reads, vcf-check www

  • hyantesite

    Bookworm & Bullseye:(1.3.0-1.1) geomatic tool to compute neighbourhood population potential www

  • hyphy-common

    Bookworm:(2.5.47+dfsg-1) Bullseye:(2.5.28+dfsg-3) Hypothesis testing using Phylogenies (common files) www

  • hyphy-mpi

    Bookworm:(2.5.47+dfsg-1) Bullseye:(2.5.28+dfsg-3) Hypothesis testing using Phylogenies (MPI version) www

  • hyphy-pt

    Bookworm:(2.5.47+dfsg-1) Bullseye:(2.5.28+dfsg-3) Hypothesis testing using Phylogenies (pthreads version) www
  • Back to top

  • I

  • idba

    Bookworm:(1.1.3-8) Bullseye:(1.1.3-7) iterative De Bruijn Graph short read assemblers www

  • idba-extra

    Bookworm:(1.1.3-8) Bullseye:(1.1.3-7) iterative De Bruijn Graph short read assemblers (extra tools) www

  • idseq-bench

    Bookworm:(0.0~git20210602.27fb6dc-1) Bullseye:(0.0~git20200902.8241a9a-1) Benchmark generator for the IDseq Portal www

  • ifeffit

    Bookworm:(2:1.2.11d-12.5) Interactive XAFS analysis program www

  • igdiscover

    Bookworm & Bullseye:(0.11-3) analyzes antibody repertoires to find new V genes www

  • ignition-common-cli

    Bookworm:(4.5.1+ds-2+b1) Collection of useful code used by robotics apps - CLI tools www

  • ignition-transport-cli

    Bookworm:(11.0.0+ds-4+b1) Ignition Robotics transport Library - CLI tools www

  • igor

    Bookworm:(1.4.0+dfsg-4) Bullseye:(1.4.0+dfsg-2) infers V(D)J recombination processes from sequencing data www

  • igv

    Bookworm:(2.16.0+dfsg-1) Bullseye:(2.6.3+dfsg-3) Integrative Genomics Viewer www

  • iitii

    Bookworm & Bullseye:(0.0+git20191030.85209e0-2) Implicit Interval Tree with Interpolation Index www

  • illustrate

    Bookworm:(0.0+git20200923.217db48-2) cartoonish representations of large biological molecules www

  • imagej

    Bookworm:(1.53t-1) Bullseye:(1.53g-2) Image processing program with a focus on microscopy images www

  • imview

    Bookworm:(1.1.9h-4+b1) Bullseye:(1.1.9h-3) Image viewing and analysis application www

  • indelible

    Bookworm & Bullseye:(1.03-5) powerful and flexible simulator of biological evolution www

  • indi-aagcloudwatcher-ng

    Bookworm:(1.7+20230106180155-1) INDI driver for the AAG Cloud Watcher www

  • indi-aok

    Bookworm:(2.0+20221222093242-1) INDI driver for AOK Skywalker www

  • indi-apogee

    Bookworm:(1.9+20221223184417-1) INDI driver for Apogee CCDs and Filter Wheels www

  • indi-armadillo-platypus

    Bookworm:(1.0+20221226082641-1) INDI driver for Lunatico Astronomia Armadillo and Platypus www

  • indi-astrolink4

    Bookworm:(0.1+20221223182627-1) INDI driver for Astrolink 4.0 devices www

  • indi-astromechfoc

    Bookworm:(0.2+20221223181816-1) INDI driver for Astromechanics Canon Lens Controller www

  • indi-avalon

    Bookworm:(1.12+20221223132122-1) INDI driver for Avalon Instruments mounts www

  • indi-beefocus

    Bookworm:(0.1+20221222010828-1) INDI driver for Bee Focus www

  • indi-bresserexos2

    Bookworm:(1.0+20221223130124-1) INDI driver for Exos II GoTo Telescope Mount www

  • indi-dreamfocuser

    Bookworm:(2.1+20221223125100-1) INDI driver for DeamFocuser focuser www

  • indi-dsi

    Bookworm:(0.4+20221223123028-1) INDI driver for Meade DSI Pro I/II/III www

  • indi-eqmod

    Bookworm:(1.0+20230126190232-1) INDI EQMod Driver www

  • indi-ffmv

    Bookworm:(0.3+20221223120905-1) INDI driver for Point Grey Firefly MV cameras www

  • indi-fli

    Bookworm:(1.5+20221225141318-1) INDI driver for FLI CCD & Focuser www

  • indi-gige

    Bookworm:(0.1+20221223115700-1) INDI driver for GigE machine vision cameras www

  • indi-gphoto

    Bookworm:(3.2+20221221172841-1) INDI driver for GPhoto (DSLR) Cameras www

  • indi-gpsd

    Bookworm:(0.5+20221222000619-1) INDI driver for gpsd GPS daemon www

  • indi-gpsnmea

    Bookworm:(0.2+20221223114018-1) INDI driver for GPS NMEA streams www

  • indi-limesdr

    Bookworm:(1.4+20221223110308-1) INDI driver for LimeSDR (LMS7) Receiver www

  • indi-maxdomeii

    Bookworm:(1.3+20221223105522-1) INDI driver for MaxDome II dome control system www

  • indi-mgen

    Bookworm:(0.1+20221222184336-1) INDI driver for Lacerta MGen Autoguider www

  • indi-nexdome

    Bookworm:(1.5+20221222183051-1) INDI driver for NexDome www

  • indi-nightscape

    Bookworm:(1.0.6+20221222181314-1) INDI driver for Celestron Nightscape 8300 www

  • indi-orion-ssg3

    Bookworm:(0.1+20221222180647-1) INDI Driver for Orion StarShoot G3 and G4 cameras www

  • indi-rtklib

    Bookworm:(1.0+20221222172722-1) INDI driver for precise positioning with RTKLIB www

  • indi-shelyak

    Bookworm:(1.0+20221222171819-1) INDI driver for Shelyak and Alpy Spectrograph www

  • indi-spectracyber

    Bookworm:(1.3+20221222164952-1) INDI driver for hydrogen line spectrometer www

  • indi-starbook

    Bookworm:(0.8+20221222163625-1) INDI driver for Vixen Starbook telescope controllers www

  • indi-starbook-ten

    Bookworm:(0.1-2) INDI driver for Vixen Starbook Ten telescope controllers www

  • indi-sx

    Bookworm:(1.16+20221222162728-1) INDI driver for Starlight Xpress CCD and Filter Wheel www

  • indi-talon6

    Bookworm:(2.0+20221222160901-1) INDI driver for Talon6 Roll Off Roof www

  • indi-webcam

    Bookworm:(1.0+20221222161740-1) INDI Driver for web cameras www

  • indi-weewx-json

    Bookworm:(1.0-1) INDI driver for the WeeWX Weather Station www

  • indigo-utils

    Bookworm & Bullseye:(1.2.3-3.1) Organic Chemistry Toolkit Utilities www

  • infernal

    Bookworm & Bullseye:(1.0.2-2) inference of RNA secondary structural alignments www

  • inhomog

    Bookworm:(0.1.9.2-1+b2) Bullseye:(0.1.9.2-1+b1) kinematical backreaction and average scale factor evolution www

  • inkscape-speleo

    Bookworm & Bullseye:(1.8-4) Inkscape plugin to help draw surveys www

  • inkscape-survex-export

    Bookworm & Bullseye:(2.0-1) Inkscape plugin to digitise printed surveys www

  • insilicoseq

    Bookworm:(1.5.4-6) Bullseye:(1.5.2-1) sequencing simulator producing realistic Illumina reads www

  • ipig

    Bookworm & Bullseye:(0.0.r5-4) integrating PSMs into genome browser visualisations www

  • iraf

    Bookworm:(2.17-4) Bullseye:(2.16.1+2018.11.01-6+b2) Image Reduction and Analysis Facility www

  • iraf-dev

    Bookworm:(2.17-4) Bullseye:(2.16.1+2018.11.01-6+b2) Image Reduction and Analysis Facility (development files) www

  • iraf-fitsutil

    Bookworm:(2018.07.06-4+b2) Bullseye:(2018.07.06-4+b1) FITS utilities for IRAF

  • iraf-mscred

    Bookworm:(5.05+2018.07.09-1+b4) Bullseye:(5.05+2018.07.09-1+b3) CCD mosaic reduction package for IRAF

  • iraf-noao

    Bookworm:(2.17-4) Bullseye:(2.16.1+2018.11.01-6+b2) IRAF NOAO data reduction package www

  • iraf-noao-dev

    Bookworm:(2.17-4) Bullseye:(2.16.1+2018.11.01-6+b2) IRAF NOAO data reduction package (development files) www

  • iraf-rvsao

    Bookworm:(2.8.5-1+b1) Bullseye:(2.8.3-1+b3) IRAF package to obtain radial velocities from spectra www

  • iraf-sptable

    Bookworm:(1.0~pre20180612-2+b2) Bullseye:(1.0~pre20180612-2+b1) IRAF package for Tabular Spectra

  • iraf-wcstools

    Bookworm:(3.9.7-1) Bullseye:(3.9.6-1) Handle the WCS of a FITS image (IRAF package) www

  • irstlm

    Bookworm:(6.00.05-3) Bullseye:(6.00.05-2) IRST Language Modeling Toolkit www

  • ismrmrd-schema

    Bookworm:(1.8.0-2) Bullseye:(1.4.2.1-6) schema for ISMRMRD www

  • iso2mesh-demos

    Bookworm:(1.9.6+ds-7) Bullseye:(1.9.6+ds-5) sample files and demo scripts for Iso2Mesh toolbox www

  • iso2mesh-tools

    Bookworm:(1.9.6+ds-7) Bullseye:(1.9.6+ds-5) 3D mesh generation and repairing utilities www

  • iva

    Bookworm:(1.0.11+ds-3) Bullseye:(1.0.9+ds-11) iterative virus sequence assembler www
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  • J

  • jaligner

    Bookworm:(1.0+dfsg-10) Bullseye:(1.0+dfsg-7) Smith-Waterman algorithm with Gotoh's improvement www

  • jalview

    Bookworm:(2.11.2.5+dfsg-3) Bullseye:(2.11.1.3+dfsg2-5) multiple alignment editor www

  • jblas

    Bookworm & Bullseye:(1.2.4-3) fast linear algebra library for Java www

  • jellyfish

    Bookworm:(2.3.0-15+b3) Bullseye:(2.3.0-10) count k-mers in DNA sequences www

  • jellyfish-examples

    Bookworm:(2.3.0-15) Bullseye:(2.3.0-10) count k-mers in DNA sequences (examples for testing) www

  • jellyfish1

    Bookworm:(1.1.11-6) Bullseye:(1.1.11-5) count k-mers in DNA sequences www

  • jemboss

    Bookworm:(6.6.0+dfsg-12) Bullseye:(6.6.0+dfsg-9) graphical user interface to EMBOSS www

  • jmodeltest

    Bookworm:(2.1.10+dfsg-12) Bullseye:(2.1.10+dfsg-10) HPC selection of models of nucleotide substitution www

  • jmol

    Bookworm:(14.32.83+dfsg-2) Bullseye:(14.6.4+2016.11.05+dfsg1-4) Molecular Viewer www

  • jnifti-demos

    Bookworm & Bullseye:(0.6-2) sample files and demo scripts for JNIfTI toolbox www

  • jsamp

    Bookworm & Bullseye:(1.3.7-1) Java Simple Application Messaging Protocol tool for VO www

  • jube

    Bookworm:(2.5.1-1) Bullseye:(2.4.1-1) JUBE Benchmarking Environment www

  • julia-factcheck

    Bookworm & Bullseye:(0.1.2-2) Midje-like testing for Julia www

  • jupyter-notebook

    Bookworm:(6.4.12-2.2) Bullseye:(6.2.0-1) Jupyter interactive notebook www
  • Back to top

  • K

  • kalign

    Bookworm:(1:3.3.5-1) Bullseye:(1:3.3-1) Global and progressive multiple sequence alignment www

  • kallisto

    Bookworm:(0.46.2+dfsg-3) Bullseye:(0.46.2+dfsg-2) near-optimal RNA-Seq quantification www

  • kallisto-examples

    Bookworm:(0.46.2+dfsg-3) Bullseye:(0.46.2+dfsg-2) near-optimal RNA-Seq quantification (example data) www

  • kalzium

    Bookworm:(4:22.12.3-1) Bullseye:(4:20.12.0-1) periodic table and chemistry tools www

  • kalzium-data

    Bookworm:(4:22.12.3-1) Bullseye:(4:20.12.0-1) data files for Kalzium www

  • kaptive

    Bookworm:(2.0.4-1) Bullseye:(0.7.3-3) obtain information about K and O types for Klebsiella genome assemblies www

  • kaptive-data

    Bookworm:(2.0.4-1) Bullseye:(0.7.3-3) reference data for kaptive for Klebsiella genome assemblies www

  • kaptive-example

    Bookworm:(2.0.4-1) Bullseye:(0.7.3-3) example data for kaptive for Klebsiella genome assemblies www

  • khmer-common

    Bookworm:(3.0.0~a3+dfsg-4) Bullseye:(2.1.2+dfsg-8) common files for the khmer project tools www

  • kineticstools

    Bookworm:(0.6.1+git20220223.1326a4d+dfsg-2) Bullseye:(0.6.1+git20200729.e3723e0+dfsg-1) detection of DNA modifications www

  • kineticstools-data

    Bookworm:(0.6.1+git20220223.1326a4d+dfsg-2) Bullseye:(0.6.1+git20200729.e3723e0+dfsg-1) detection of DNA modifications -- data files www

  • king-probe

    Bookworm:(02.21-1) Bullseye:(2.16.160404+git20200121.9b198c1-3) Evaluate and visualize protein interatomic packing www

  • kleborate-examples

    Bookworm:(2.3.1-2) Bullseye:(2.0.1-1) tool to screen Klebsiella genome assemblies (example data) www

  • klustakwik

    Bookworm:(3.0.2+ds-2) Bullseye:(3.0.2+ds-1) automatic sorting of the samples (spikes) into clusters www

  • kma

    Bookworm:(1.3.23-1) Bullseye:(1.3.10-1) mapping genomic sequences to raw reads directly against redundant databases www

  • kmc

    Bookworm:(3.2.1+dfsg-1) Bullseye:(3.1.1+dfsg-3) count kmers in genomic sequences www

  • kmer

    Bookworm & Bullseye:(0~20150903+r2013-8) suite of tools for DNA sequence analysis www

  • kmer-examples

    Bookworm & Bullseye:(0~20150903+r2013-8) sample data for kmer suite of tools for DNA sequence analysis www

  • kmerresistance

    Bookworm:(2.2.0-4) Bullseye:(2.2.0-2) correlates mapped genes with the predicted species of WGS samples www

  • konclude

    Bookworm:(0.7.0+1138+git20220514~dfsg-1) Bullseye:(0.7.0+1137~dfsg-1) tableau-based description logic reasoner for the semantic web www

  • kraken

    Bookworm:(1.1.1-4) Bullseye:(1.1.1-2) assigning taxonomic labels to short DNA sequences www

  • kraken2

    Bookworm:(2.1.2-2) Bullseye:(2.1.1-1) taxonomic classification system using exact k-mer matches www

  • kst

    Bookworm:(2.0.8-5+b2) Bullseye:(2.0.8-4+b1) scientific data plotting tool www

  • kstars

    Bookworm:(5:3.6.2-2) Bullseye:(5:3.4.3-1+b2) desktop planetarium, observation planning and telescope control www

  • kstars-data

    Bookworm:(5:3.6.2-2) Bullseye:(5:3.4.3-1) data files for KStars desktop planetarium www

  • kstars-data-extra-tycho2

    Bookworm & Bullseye:(1.1r1-9.1) Tycho-2 star catalog for KStars

  • kxterm

    Bookworm & Bullseye:(20061220+dfsg3-4.4) CERNLIB data analysis suite - KUIP terminal emulator www
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  • L

  • lagan

    Bookworm:(2.0-9) Bullseye:(2.0-6) highly parametrizable pairwise global genome sequence aligner www

  • lamarc

    Bookworm:(2.1.10.1+dfsg-7+b1) Bullseye:(2.1.10.1+dfsg-5) Likelihood Analysis with Metropolis Algorithm using Random Coalescence www

  • lamassemble

    Bookworm:(1.4.2-5) Merges overlapping "long" DNA reads into a consensus sequences www

  • lambda-align

    Bookworm & Bullseye:(1.0.3-6) Local Aligner for Massive Biological DatA www

  • lambda-align2

    Bookworm & Bullseye:(2.0.0-6) Local Aligner for Massive Biological DatA - v2 www

  • lammps

    Bookworm:(20220106.git7586adbb6a+ds1-2+b2) Bullseye:(20210122~gita77bb+ds1-2) Molecular Dynamics Simulator www

  • last-align

    Bookworm:(1447-1) Bullseye:(1179-1) genome-scale comparison of biological sequences www

  • lastz

    Bookworm:(1.04.22-2) Bullseye:(1.04.03-4) pairwise aligning DNA sequences www

  • lastz-examples

    Bookworm:(1.04.22-2) Bullseye:(1.04.03-4) pairwise aligning DNA sequences (examples and test scripts) www

  • lbt

    Bookworm & Bullseye:(1.2.2-7) converts from LTL formulas to Büchi automata www

  • leaff

    Bookworm:(0~20150903+r2013-8+b3) Bullseye:(0~20150903+r2013-8+b1) biological sequence library utilities and applications www

  • lefse

    Bookworm:(1.1.2-1) Bullseye:(1.0.8-3) determine features of organisms, clades, taxonomic units, genes www

  • lexd

    Bookworm:(1.3.1-1+b1) Lexicon compiler for non-suffixational morphologies www

  • libadios-bin

    Bookworm:(1.13.1-31+b1) Bullseye:(1.13.1-28.2) ADIOS Adaptable IO system for simulations - binaries www

  • libadios-examples

    Bookworm:(1.13.1-31) Bullseye:(1.13.1-28.2) Examples for the ADIOS Adaptable IO system www

  • libball1.5-data

    Bookworm:(1.5.0+git20180813.37fc53c-11) Bullseye:(1.5.0+git20180813.37fc53c-6) Biochemical Algorithms Library (data files) www

  • libbio-db-hts-perl

    Bookworm:(3.01-4+b3) Bullseye:(3.01-3+b2) Perl interface to the HTS library www

  • libbio-tools-phylo-paml-perl

    Bookworm:(1.7.3-4) Bullseye:(1.7.3-3) Bioperl interface to the PAML suite www

  • libbio-tools-run-alignment-clustalw-perl

    Bookworm:(1.7.4-3) Bullseye:(1.7.4-2) Bioperl interface to Clustal W www

  • libbio-tools-run-alignment-tcoffee-perl

    Bookworm:(1.7.4-3) Bullseye:(1.7.4-2) Bioperl interface to T-Coffee www

  • libchemicaltagger-java

    Bookworm:(1.6.2-2) tool for semantic text-mining in chemistry www

  • libclhep2.1v5

    Bookworm:(2.1.4.1+dfsg-1.1) Bullseye:(2.1.4.1+dfsg-1) CLHEP: A Class Library for High Energy Physics www

  • libdbcsr-dev

    Bookworm:(2.5.0-1) Distributed Block Compressed Sparse Row matrix library www

  • libdlpack-dev

    Bookworm:(0.6-1) Bullseye:(0.0~git20200217.3ec0443-2) Open In Memory Tensor Structure www

  • libdyssol1.0

    Bookworm:(1.1.1+ds1-1) Tool for dynamic flowsheet simulation. Shared libraries www

  • libeccodes-data

    Bookworm:(2.28.0-1) Bullseye:(2.20.0-1) GRIB and BUFR enecoding/encoding software library - data www

  • libej0

    Bookworm & Bullseye:(4.8.8+repack-2) hardware & software framework for developing science experiments www

  • libfckit-utils

    Bookworm:(0.10.0-2) Bullseye:(0.9.0-6) Library Fortran toolkit for interoperating Fortran with C/C++ www

  • libgeotiff-epsg

    Bookworm & Bullseye:(1.4.3-1) GeoTIFF library -- EPSG Geodetic Parameter Dataset www

  • libgfsgl0

    Bookworm & Bullseye:(20121130+dfsg-7) graphical viewer for Gerris simulation files. Shared library www

  • libghemical-data

    Bookworm & Bullseye:(3.0.0-4.3) Molecular Modelling Library (data files) www

  • libgoby-io-java

    Bookworm:(3.3.1+dfsg2-9) IO API for goby www

  • libgrib-api-data

    Bookworm & Bullseye:(1.8.0.1-1) grib_api definition files www

  • libhdf5-jni

    Bookworm:(1.10.8+repack1-1) Bullseye:(1.10.6+repack-4+deb11u1) native library used by libhdf5-java www

  • libinchi-bin

    Bookworm:(1.03+dfsg-4) International Chemical Identifier (InChI) algorithm (executable) www

  • libjgrapht-java

    Bookworm:(1.5.1-3) Java library of graph theory data structures and algorithms www

  • liblammps-dev

    Bookworm:(20220106.git7586adbb6a+ds1-2+b2) Bullseye:(20210122~gita77bb+ds1-2) Molecular Dynamics Simulator (dev files) www

  • liblammps0

    Bookworm:(20220106.git7586adbb6a+ds1-2+b2) Bullseye:(20210122~gita77bb+ds1-2) Molecular Dynamics Simulator (shared library) www

  • liblemon-utils

    Bookworm:(1.3.1+dfsg-6) Bullseye:(1.3.1+dfsg-4) Library for Efficient Modeling and Optimization in Networks (utilities) www

  • libliggghts3

    Bookworm:(3.8.0+repack1-9+b1) Bullseye:(3.8.0+repack1-7) Open Source DEM Particle Simulation Software. Shared library www

  • liblinear-tools

    Bookworm & Bullseye:(2.3.0+dfsg-5) Standalone applications for LIBLINEAR www

  • liblorene-debian1

    Bookworm:(0.0.0~cvs20161116+dfsg-1+b4) Bullseye:(0.0.0~cvs20161116+dfsg-1+b3) liblorene shared library www

  • liblorene-export-debian0

    Bookworm:(0.0.0~cvs20161116+dfsg-1+b4) Bullseye:(0.0.0~cvs20161116+dfsg-1+b3) liblorene_export shared library www

  • liblorenef77-debian1

    Bookworm:(0.0.0~cvs20161116+dfsg-1+b4) Bullseye:(0.0.0~cvs20161116+dfsg-1+b3) liblorenef77 shared library www

  • libmcpl-dev

    Bookworm:(1.3.2-3.1) Monte Carlo Particle Lists - development files www

  • libmcpl1

    Bookworm:(1.3.2-3.1) Monte Carlo Particle Lists - library www

  • libmed-tools

    Bookworm:(4.1.0+repack-3+rpi1) Bullseye:(4.1.0+repack-2+b1) Runtime tools to handle MED files www

  • libmstoolkit-tools

    Bookworm & Bullseye:(82-7) libraries for manipulating mass spectrometry data - tools www

  • libncarg-bin

    Bookworm:(6.6.2.dfsg.1-1) Bullseye:(6.6.2-7) NCAR command-language library - development tools www

  • libncarg-data

    Bookworm:(6.6.2.dfsg.1-1) Bullseye:(6.6.2-7) NCAR command-language library - Data www

  • libocas-tools

    Bookworm:(0.97+dfsg-8) Bullseye:(0.97+dfsg-6) Standalone applications implementing the OCAS solver www

  • libonnx-dev

    Bookworm:(1.12.0-2+b2) Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (dev) www

  • libonnx-testdata

    Bookworm:(1.12.0-2) Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (test data) www

  • libonnx1

    Bookworm:(1.12.0-2+b2) Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (libs) www

  • libonnxifi

    Bookworm:(1.12.0-2+b2) Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (ONNXIFI) www

  • libopenfoam

    Bookworm:(1912.200626-1+b1) Bullseye:(1912.200626-1) Open source toolbox for Computational Fluid Dynamics (CFD) - libraries www

  • liboscar4-java

    Bookworm:(5.2.0+dfsg-2) automated annotation of chemistry in scientific articles www

  • libphitsmcpl1

    Bookworm:(1.3.2-3.1) Monte Carlo Particle Lists - PHITS library www

  • libpluto-jpl-eph-dev

    Bookworm & Bullseye:(0.0~git20180228-1.1) development files to interact with JPL ephemeres data www

  • libpluto-lunar-dev

    Bookworm & Bullseye:(0.0~git20180825.e34c1d1-1) development files for astronomical Lunar library www

  • libpwiz-tools

    Bookworm:(3.0.18342-4+b1) Bullseye:(3.0.18342-4) ProteoWizard command line tools www

  • libqgis-customwidgets

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) QGIS custom widgets for Qt Designer www

  • librsl1

    Bookworm & Bullseye:(1.43-1.2) TRMM Radar Software Library www

  • libsilo-bin

    Bookworm:(4.11-3+b1) Bullseye:(4.10.2.real-9) Utilities to manipulate libsilo files www

  • libsmiles-scripts-java

    Bookworm:(0.2.0+dfsg1-4) command line tools to handle SMILES descriptors - Java libraries www

  • libsmiles-scripts-perl

    Bookworm:(0.2.0+dfsg1-4) command line tools to handle SMILES descriptors - Perl libraries www

  • libssm-bin

    Bookworm & Bullseye:(1.4.0-2) macromolecular superposition library - binaries www

  • libsswmcpl1

    Bookworm:(1.3.2-3.1) Monte Carlo Particle Lists - SSW library www

  • libstxxl1v5

    Bookworm & Bullseye:(1.4.1-3) C++ Standard Template Library for extra large datasets www

  • libtrexio0

    Bookworm:(2.2.3-3) TREX I/O library for efficient data I/O in quantum chemistry. www

  • libvcflib-tools

    Bookworm:(1.0.3+dfsg-2) Bullseye:(1.0.2+dfsg-2) C++ library for parsing and manipulating VCF files (tools) www

  • libvdjtools-java

    Bookworm:(1.2.1+git20190311+repack-1) Bullseye:(1.2.1+git20190311-5) Java library of vdjtools www

  • libwannier90-dev

    Bookworm:(3.1.0+ds-7) Bullseye:(3.1.0+ds-4) Maximally Localized Wannier Functions - development library www

  • libxgboost-predictor-java

    Bookworm:(0.3.1+dfsg-2) Java implementation of XGBoost predictor for online prediction tasks www

  • libxy-bin

    Bookworm:(1.6-2+b1) Bullseye:(1.6-1) xylib - utilities www

  • liggghts

    Bookworm:(3.8.0+repack1-9+b1) Bullseye:(3.8.0+repack1-7) Open Source DEM Particle Simulation Software. www

  • lighter

    Bookworm:(1.1.2-7) Bullseye:(1.1.2-5) fast and memory-efficient sequencing error corrector www

  • litl-tools

    Bookworm:(0.1.9-13) Bullseye:(0.1.9-12) Lightweight Trace Library - tools www

  • logol

    Bookworm:(1.7.9+dfsg-6) Bullseye:(1.7.9-3) Pattern matching tool using Logol language www

  • logol-bin

    Bookworm:(1.7.9+dfsg-6) Bullseye:(1.7.9-3) Pattern matching tool using Logol language www

  • loki

    Bookworm & Bullseye:(2.4.7.4-10) MCMC linkage analysis on general pedigrees

  • looktxt

    Bookworm:(1.4.1-3) Convert free format text file into scientific data formats www

  • lorene

    Bookworm & Bullseye:(0.0.0~cvs20161116+dfsg-1) framework for numerical relativity www

  • lorene-codes-src

    Bookworm & Bullseye:(0.0.0~cvs20161116+dfsg-1) source files of LORENE-based codes www

  • ltrsift

    Bookworm & Bullseye:(1.0.2-9+b1) postprocessing and classification of LTR retrotransposons www

  • lttoolbox

    Bookworm:(3.7.1-1+b2) Bullseye:(3.5.3-1) Apertium lexical processing modules and tools www

  • lttoolbox-dev

    Bookworm:(3.7.1-1+b2) Bullseye:(3.5.3-1) Development tools and library for lttoolbox www

  • lucy

    Bookworm & Bullseye:(1.20-3) DNA sequence quality and vector trimming tool www

  • lumpy-sv

    Bookworm:(0.3.1+dfsg-7) Bullseye:(0.3.1+dfsg-5) general probabilistic framework for structural variant discovery www

  • lumpy-sv-examples

    Bookworm:(0.3.1+dfsg-7) Bullseye:(0.3.1+dfsg-5) general probabilistic framework for structural variant discovery (data) www

  • lutefisk

    Bookworm & Bullseye:(1.0.7+dfsg-7) de novo interpretation of peptide CID spectra www

  • lxi-tools

    Bookworm:(2.4-1) Bullseye:(1.21-1+b1) LAN eXtensions for Instrumentation (LXI) software interface www
  • Back to top

  • M

  • macs

    Bookworm:(2.2.7.1-6+b1) Bullseye:(2.2.7.1-3+b1) Model-based Analysis of ChIP-Seq on short reads sequencers www

  • maffilter

    Bookworm:(1.3.1+dfsg-4) Bullseye:(1.3.1+dfsg-2) process genome alignment in the Multiple Alignment Format www

  • maffilter-examples

    Bookworm:(1.3.1+dfsg-4) Bullseye:(1.3.1+dfsg-2) process genome alignment in the Multiple Alignment Format (example data) www

  • mafft

    Bookworm:(7.505-1) Bullseye:(7.475-1) Multiple alignment program for amino acid or nucleotide sequences www

  • magics++

    Bookworm:(4.13.0-1) Bullseye:(4.5.3-1) Executables for the magics++ library www

  • malt

    Bookworm:(0.5.2-2) sequence alignment and analysis tool to process sequencing data www

  • mandelbrot-solver

    Bookworm:(3.2.1-7) Bullseye:(3.2.1-2) Solver for Mandelbrot polynomials based on MPSolve www

  • mapdamage

    Bookworm:(2.2.1+dfsg-3) Bullseye:(2.2.1+dfsg-1) tracking and quantifying damage patterns in ancient DNA sequences www

  • mapsembler2

    Bookworm & Bullseye:(2.2.4+dfsg-4) bioinformatics targeted assembly software www

  • maq

    Bookworm & Bullseye:(0.7.1-9) maps short fixed-length polymorphic DNA sequence reads to reference sequences www

  • maqview

    Bookworm:(0.2.5-11) Bullseye:(0.2.5-10) graphical read alignment viewer for short gene sequences www

  • massxpert

    Bookworm:(7.0.0-2) Bullseye:(6.0.2-1) polymer chemistry modelling and mass spectrometry data simulation (runtime) www

  • massxpert-data

    Bookworm:(7.0.0-2) Bullseye:(6.0.2-1) polymer chemistry modelling and mass spectrometry data simulation (data) www

  • matlab-brain2mesh

    Bookworm & Bullseye:(0.7.9-2) automated brain tetrahedral mesh generation toolbox for MATLAB www

  • matlab-gdf

    Bookworm:(0.1.3-11) Bullseye:(0.1.3-8) IO library for the GDF -- Matlab interface www

  • matlab-iso2mesh

    Bookworm:(1.9.6+ds-7) Bullseye:(1.9.6+ds-5) 3D surface and volumetric mesh generator for MATLAB www

  • matlab-jnifti

    Bookworm & Bullseye:(0.6-2) fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter for MATLAB www

  • matlab-jsonlab

    Bookworm:(2.0-2) Bullseye:(2.0-1.1) native JSON/UBJSON/MassagePack encoder/decoder for MATLAB www

  • matlab-zmat

    Bookworm:(0.9.8+ds-8) Bullseye:(0.9.8+ds-3) in-memory data compression for MATLAB www

  • maude

    Bookworm:(3.2-2) Bullseye:(3.1-2) high-performance logical framework www

  • mauve-aligner

    Bookworm:(2.4.0+4736-6) Bullseye:(2.4.0+4736-3) multiple genome alignment www

  • mayavi2

    Bookworm:(4.8.0-2) Bullseye:(4.7.1-2+b2) scientific visualization package for 2-D and 3-D data www

  • mbpoll

    Bookworm & Bullseye:(1.4.11+dfsg-2) command line utility to communicate with ModBus slave (RTU or TCP) www

  • mbt

    Bookworm & Bullseye:(3.6-3) memory-based tagger-generator and tagger www

  • mbtserver

    Bookworm & Bullseye:(0.14-2) Server extensions for the MBT tagger www

  • mcaller

    Bookworm:(1.0.3+git20210624.b415090-3) find methylation in nanopore reads www

  • mcpl

    Bookworm:(1.3.2-3.1) Monte Carlo Particle Lists - libraries and tools www

  • meep

    Bookworm:(1.25.0-2) Bullseye:(1.17.1-1) software package for FDTD simulation www

  • meep-mpi-default

    Bookworm:(1.25.0-2) Bullseye:(1.17.1-2) software package for FDTD simulation, parallel (OpenMPI) version www

  • meep-openmpi

    Bookworm:(1.25.0-2) Bullseye:(1.17.1-2) software package for FDTD simulation, parallel (OpenMPI) version www

  • megadepth

    Bookworm:(1.2.0-4) computes coverage from BigWig and BAM sequencing files www

  • megan-ce

    Bookworm:(6.21.1+dfsg-2) interactive tool to explore and analyse microbiome sequencing data www

  • melting

    Bookworm & Bullseye:(5.2.0-2) compute the melting temperature of nucleic acid duplex www

  • merkaartor

    Bookworm:(0.19.0+ds-3+rpi1) Bullseye:(0.18.4+ds-5+b2) map editor for OpenStreetMap.org www

  • meryl

    Bookworm:(0~20150903+r2013-8+b3) Bullseye:(0~20150903+r2013-8+b1) in- and out-of-core kmer counting and utilities www

  • metaphlan

    Bookworm:(4.0.4-1) Metagenomic Phylogenetic Analysis www

  • metaphlan2-data

    Bookworm & Bullseye:(2.6.0+ds-4) data package for Metagenomic Phylogenetic Analysis www

  • metastudent

    Bookworm:(2.0.1-9) Bullseye:(2.0.1-8) predictor of Gene Ontology terms from protein sequence www

  • metastudent-data

    Bookworm:(2.0.1-8) Bullseye:(2.0.1-7) predictor of Gene Ontology terms from protein sequence - data files www

  • metastudent-data-2

    Bookworm:(1.0.0-6) Bullseye:(1.0.0-5) predictor of Gene Ontology terms from protein sequence - data #2 www

  • metview-data

    Bookworm:(5.17.4-1) Bullseye:(5.10.2-1) Data needed for the Metview data analysis environment www

  • mhap

    Bookworm & Bullseye:(2.1.3+dfsg-3) locality-sensitive hashing to detect long-read overlaps www

  • mia-doctools

    Bookworm:(2.4.7-11) Bullseye:(2.4.7-7) Helper scripts for run-time document creation www

  • mia-tools

    Bookworm:(2.4.7-11+b1) Bullseye:(2.4.7-7) Command line tools for gray scale image processing www

  • mia-viewit

    Bookworm & Bullseye:(1.0.5-3) Viewer program for 3D data sets created by using MIA www

  • mialmpick

    Bookworm:(0.2.15-2) Bullseye:(0.2.15-1) Tools for landmark picking in 3D volume data sets www

  • microbegps

    Bookworm & Bullseye:(1.0.0-5) explorative taxonomic profiling tool for metagenomic data www

  • microbiomeutil

    Bookworm:(20101212+dfsg1-5) Bullseye:(20101212+dfsg1-4) Microbiome Analysis Utilities www

  • microbiomeutil-data

    Bookworm:(20101212+dfsg1-5) Bullseye:(20101212+dfsg1-4) Reference 16S sequences and NAST-alignments used by microbiomeutil tools www

  • microhope

    Bookworm & Bullseye:(4.8.8+repack-2) hardware & software framework to learn microcontrollers www

  • minc-tools

    Bookworm:(2.3.00+dfsg-10+b3) Bullseye:(2.3.00+dfsg-6) MNI medical image format tools www

  • mindthegap-examples

    Bookworm:(2.3.0-2) Bullseye:(2.2.2-2) optional scripts and example resources for mindthegap www

  • minexpert2

    Bookworm:(8.6.3-1) Bullseye:(7.4.1-1) MS^n mass spectrometric data visualization and mining (runtime) www

  • minia

    Bookworm & Bullseye:(1.6906-2) short-read biological sequence assembler www

  • miniasm

    Bookworm:(0.3+dfsg-4) Bullseye:(0.3+dfsg-2) ultrafast de novo assembler for long noisy DNA sequencing reads www

  • minimap

    Bookworm:(0.2-7) Bullseye:(0.2-5) tool for approximate mapping of long biosequences such as DNA reads www

  • minimap2

    Bookworm:(2.24+dfsg-3+b1) Bullseye:(2.17+dfsg-12+b1) versatile pairwise aligner for genomic and spliced nucleotide sequences www

  • minisat

    Bookworm & Bullseye:(1:2.2.1-5) Fast and lightweight SAT solver www

  • minisat+

    Bookworm & Bullseye:(1.0-4) solver for pseudo-Boolean constraints www

  • mipe

    Bookworm & Bullseye:(1.1-9) Tools to store PCR-derived data www

  • mira-assembler

    Bookworm:(4.9.6-7+b1) Bullseye:(4.9.6-5) Whole Genome Shotgun and EST Sequence Assembler www

  • mira-rfam-12s-rrna

    Bookworm:(4.9.6-7) Bullseye:(4.9.6-5) extract of RFAM 12 rRNA database www

  • mirtop

    Bookworm:(0.4.25-2) Bullseye:(0.4.23-2) annotate miRNAs with a standard mirna/isomir naming www

  • missfits

    Bookworm:(2.8.0-5) Bullseye:(2.8.0-4) Basic maintenance and packaging tasks on FITS files www

  • mitools

    Bookworm:(2.0.5-3+b1) Bullseye:(2.0.4-3) view, convert and perform basic maths with medical image datasets www

  • mlv-smile

    Bookworm & Bullseye:(1.47-8) Find statistically significant patterns in sequences www

  • mmb-common

    Bookworm:(4.0.0+dfsg-2) Bullseye:(3.2+dfsg-2+deb11u1) model the structure and dynamics of macromolecules (common files) www

  • mmseqs2

    Bookworm & Bullseye:(12-113e3+ds-3) ultra fast and sensitive protein search and clustering www

  • mmseqs2-examples

    Bookworm & Bullseye:(12-113e3+ds-3) optional resources for the mmseqs2 package www

  • mobyle-programs

    Bookworm & Bullseye:(5.1.2-3) program descriptions for the mobyle portal www

  • mobyle-tutorials

    Bookworm & Bullseye:(1.5.0-4) program tutorials for the mobyle portal www

  • mocassin

    Bookworm & Bullseye:(2.02.73.2-1) MOnte CArlo SimulationS of Ionised Nebulae www

  • mocassin-benchmarks

    Bookworm & Bullseye:(2.02.73.2-1) benchmarks for the photoionisation code MOCASSIN www

  • mocassin-data

    Bookworm & Bullseye:(2.02.73.2-1) atomic and optical data for the photoionisation code MOCASSIN www

  • mocassin-examples

    Bookworm & Bullseye:(2.02.73.2-1) Examples for the photoionisation code MOCASSIN www

  • molds

    Bookworm:(0.3.1-1+b6) Bullseye:(0.3.1-1+b4) Semi-empirical electronic structure and molecular dynamics www

  • molequeue

    Bookworm:(0.9.0-1) Desktop integration of high performance computing resources www

  • mona

    Bookworm:(1.4-18-1) Bullseye:(1.4-17-2) theorem prover based on automata www

  • montage

    Bookworm:(6.0+dfsg-7+b5) Bullseye:(6.0+dfsg-7+b2) Toolkit for assembling FITS images into mosaics www

  • montage-gridtools

    Bookworm:(6.0+dfsg-7+b5) Bullseye:(6.0+dfsg-7+b2) Create files to run montage on the grid www

  • mopac

    Bookworm:(22.0.6+dfsg-1) Molecular Orbital PACkage (MOPAC) www

  • mopac7-bin

    Bookworm & Bullseye:(1.15-6+b1) Semi-empirical Quantum Chemistry Library (binaries) www

  • morse-simulator

    Bookworm:(1.4-8) Multi-OpenRobot Simulation Engine www

  • morse-simulator-data

    Bookworm:(1.4-8) Multi-OpenRobot Simulation Engine www

  • mosdepth

    Bookworm:(0.3.3+ds-2) Bullseye:(0.3.1+ds-2) BAM/CRAM depth calculation biological sequencing www

  • mosdepth-examples

    Bookworm:(0.3.3+ds-2) Bullseye:(0.3.1+ds-2) Test data for mosdepth www

  • mothur

    Bookworm:(1.48.0-2) Bullseye:(1.44.3-2) sequence analysis suite for research on microbiota www

  • mozilla-biofox

    Bookworm & Bullseye:(1.6-1) extension of bioinformatics tools to Iceape and Iceweasel browsers www

  • mpb

    Bookworm:(1.11.1-5) Bullseye:(1.11.1-3) MIT Photonic-Bands www

  • mpb-mpi

    Bookworm:(1.11.1-5) Bullseye:(1.11.1-3) MIT Photonic-Bands, parallel (mpich) version www

  • mpb-scm

    Bookworm:(1.11.1-5) Bullseye:(1.11.1-3) MIT Photonic-Bands initialisation files www

  • mpgrafic

    Bookworm:(0.3.19-1+b1) Bullseye:(0.3.19-1) MPI version of N-body initial conditions grafic package www

  • mpi-testsuite

    Bookworm & Bullseye:(3.2+dfsg-1) MPI testsuite results www

  • mpqc

    Bookworm:(2.3.1-22) Bullseye:(2.3.1-21) Massively Parallel Quantum Chemistry Program www

  • mpqc-support

    Bookworm:(2.3.1-22) Bullseye:(2.3.1-21) Massively Parallel Quantum Chemistry Program (support tools) www

  • mpsolve

    Bookworm:(3.2.1-7) Bullseye:(3.2.1-2) Multiprecision polynomial solver (command line version) www

  • mptp

    Bookworm:(0.2.4-3+b1) Bullseye:(0.2.4-3) single-locus species delimitation www

  • mrbayes

    Bookworm:(3.2.7a-6+b1) Bullseye:(3.2.7a-4+b1) Bayesian Inference of Phylogeny www

  • mrbayes-mpi

    Bookworm:(3.2.7a-6+b1) Bullseye:(3.2.7a-4+b1) Bayesian Inference of Phylogeny - mpi version www

  • mriconvert

    Bookworm:(1:2.1.0-5+b1) Bullseye:(1:2.1.0-4) medical image file conversion utility www

  • mricron

    Bookworm:(1.2.20211006+dfsg-4) Bullseye:(1.0.20190902+dfsg-2) magnetic resonance image conversion, viewing and analysis www

  • mricron-data

    Bookworm:(1.2.20211006+dfsg-4) Bullseye:(1.0.20190902+dfsg-2) data files for MRIcron www

  • mrpt-apps

    Bookworm:(1:2.5.8+ds-2) Bullseye:(1:2.1.7-2) Mobile Robot Programming Toolkit - Console and GUI applications www

  • mrpt-common

    Bookworm:(1:2.5.8+ds-2) Bullseye:(1:2.1.7-2) Mobile Robot Programming Toolkit - Example datasets and files www

  • mseed2sac

    Bookworm & Bullseye:(2.3+ds1-1) Convert MiniSEED time series data to SAC www

  • multiqc

    Bookworm:(1.14+dfsg-1) Bullseye:(1.9+dfsg-3) output integration for RNA sequencing across tools and samples www

  • mummer

    Bookworm:(3.23+dfsg-8) Bullseye:(3.23+dfsg-7) Efficient sequence alignment of full genomes www

  • munipack

    Bookworm:(0.6.1-1) Bullseye:(0.5.14-2) Astronomical photometry software package www

  • munipack-cli

    Bookworm:(0.6.1-1+b2) Bullseye:(0.5.14-2) Command line interface of Munipack www

  • munipack-core

    Bookworm:(0.6.1-1+b2) Bullseye:(0.5.14-2) Core routines of Munipack www

  • munipack-gui

    Bookworm:(0.6.1-1+b2) Bullseye:(0.5.14-2) Graphical user interface of Munipack www

  • murasaki

    Bookworm:(1.68.6-13+b5) Bullseye:(1.68.6-12) homology detection tool across multiple large genomes www

  • murasaki-common

    Bookworm:(1.68.6-13) Bullseye:(1.68.6-12) homology detection tool across multiple large genomes (common files) www

  • murasaki-mpi

    Bookworm:(1.68.6-13+b5) Bullseye:(1.68.6-12) homology detection tool across multiple large genomes (MPI-version) www

  • muscle

    Bookworm:(1:5.1.0-1) Bullseye:(1:3.8.1551-2) Multiple alignment program of protein sequences www

  • muscle3

    Bookworm:(3.8.1551-2) multiple alignment program of protein sequences www

  • music-bin

    Bookworm:(1.1.16-1.1+b4) Bullseye:(1.1.16-1.1+b2) Multi-Simulation Coordinator for MPI -- Utilities www

  • mustang

    Bookworm:(3.2.4-1) Bullseye:(3.2.3-4) multiple structural alignment of proteins www

  • mustang-testdata

    Bookworm:(3.2.4-1) Bullseye:(3.2.3-4) multiple structural alignment of proteins, test data www
  • Back to top

  • N

  • nanolyse

    Bookworm:(1.2.0-4+b4) Bullseye:(1.2.0-1+b8) remove lambda phage reads from a fastq file www

  • nanook

    Bookworm:(1.33+dfsg-5) Bullseye:(1.33+dfsg-2.1) pre- and post-alignment analysis of nanopore sequencing data www

  • nanook-examples

    Bookworm:(1.33+dfsg-5) Bullseye:(1.33+dfsg-2.1) pre- and post-alignment analysis of nanopore sequencing data (examples) www

  • nanopolish

    Bookworm:(0.14.0-1+b1) Bullseye:(0.13.2-3) consensus caller for nanopore sequencing data www

  • nanostat

    Bookworm & Bullseye:(1.4.0-3) statistics on long biological sequences www

  • nanosv

    Bookworm:(1.2.4+git20190409.c1ae30c-6) Bullseye:(1.2.4+git20190409.c1ae30c-3) structural variant caller for nanopore data www

  • nast-ier

    Bookworm:(20101212+dfsg1-5) Bullseye:(20101212+dfsg1-4) NAST-based DNA alignment tool www

  • nautic

    Bookworm:(1.5-6+b1) Bullseye:(1.5-4) computation of observer position in astro-navigation www

  • ncbi-acc-download

    Bookworm:(0.2.8-1) Bullseye:(0.2.7-1) download genome files from NCBI by accession www

  • ncbi-blast+

    Bookworm:(2.12.0+ds-3+b2) Bullseye:(2.11.0+ds-1) next generation suite of BLAST sequence search tools www

  • ncbi-blast+-legacy

    Bookworm:(2.12.0+ds-3) Bullseye:(2.11.0+ds-1) NCBI Blast legacy call script www

  • ncbi-cn3d

    Bookworm:(3.0.20170106+dfsg1-10) Bullseye:(3.0.20170106+dfsg1-9) 3-dimensional viewer for biological molecules www

  • ncbi-entrez-direct

    Bookworm:(19.0.20230216+dfsg-2) Bullseye:(14.6.20210224+dfsg-4) NCBI Entrez utilities on the command line www

  • ncbi-epcr

    Bookworm & Bullseye:(2.3.12-1-9) Tool to test a DNA sequence for the presence of sequence tagged sites www

  • ncbi-rrna-data

    Bookworm:(6.1.20170106+dfsg1-10) Bullseye:(6.1.20170106+dfsg1-9) large rRNA BLAST databases distributed with the NCBI toolkit www

  • ncbi-seg

    Bookworm & Bullseye:(0.0.20000620-6) tool to mask segments of low compositional complexity in amino acid sequences www

  • ncbi-tools-bin

    Bookworm:(6.1.20170106+dfsg1-10) Bullseye:(6.1.20170106+dfsg1-9) NCBI libraries for biology applications (text-based utilities) www

  • ncbi-tools-x11

    Bookworm:(6.1.20170106+dfsg1-10) Bullseye:(6.1.20170106+dfsg1-9) NCBI libraries for biology applications (X-based utilities) www

  • ncl-ncarg

    Bookworm:(6.6.2.dfsg.1-1) Bullseye:(6.6.2-7) NCAR Command Language and NCAR graphics www

  • ncl-tools

    Bookworm:(2.1.21+git20210811.b1213a7-4) Bullseye:(2.1.21+git20190531.feceb81-3) tools to deal with NEXUS files www

  • nco

    Bookworm:(5.1.4-1+deb12u1) Bullseye:(4.9.7-1) Command-line operators to analyze netCDF files www

  • ncoils

    Bookworm:(2002-9) Bullseye:(2002-8) coiled coil secondary structure prediction www

  • ncview

    Bookworm:(2.1.8+ds-5+rpi1) Bullseye:(2.1.8+ds-4) X11 visual browser for NetCDF format files www

  • neat

    Bookworm:(2.3.2-2+b1) Bullseye:(2.3.2-2) Nebular Empirical Analysis Tool www

  • neobio

    Bookworm & Bullseye:(0.0.20030929-6) computes alignments of amino acid and nucleotide sequences www

  • netcdf-bin

    Bookworm:(1:4.9.0-3+b2) Bullseye:(1:4.7.4-1) Programs for reading and writing NetCDF files www

  • neurodebian

    Bookworm:(0.41.2+nmu1) Bullseye:(0.41.0) neuroscience-oriented distribution - repository configuration www

  • neurodebian-archive-keyring

    Bookworm:(0.41.2+nmu1) Bullseye:(0.41.0) neuroscience-oriented distribution - GnuPG archive keys www

  • neurodebian-desktop

    Bookworm:(0.41.2+nmu1) Bullseye:(0.41.0) neuroscience-oriented distribution - desktop integration www

  • neurodebian-dev

    Bookworm:(0.41.2+nmu1) Bullseye:(0.41.0) neuroscience-oriented distribution - development tools www

  • neurodebian-freeze

    Bookworm:(0.41.2+nmu1) Bullseye:(0.41.0) nd_freeze tool to freeze APT sources to use snapshots www

  • neurodebian-popularity-contest

    Bookworm:(0.41.2+nmu1) Bullseye:(0.41.0) neuroscience-oriented distribution - popcon integration www

  • neuron

    Bookworm:(8.2.2-4) Simulation environment for computational models of neurons www

  • neuron-dev

    Bookworm:(8.2.2-4) Neuron simulation environment - Development files www

  • nexus-tools

    Bookworm & Bullseye:(4.4.3-5) NeXus scientific data file format - applications www

  • ngmlr

    Bookworm:(0.2.7+git20210816.a2a31fb+dfsg-2) Bullseye:(0.2.7+dfsg-4) CoNvex Gap-cost alignMents for Long Reads www

  • nifti-bin

    Bookworm:(3.0.1-9) Bullseye:(3.0.1-8) tools shipped with the NIfTI library www

  • nim-kexpr-dev

    Bookworm:(0.0.2-3) Bullseye:(0.0.2-2) kexpr math expressions for nim www

  • nim-lapper-dev

    Bookworm:(0.1.7-5) Bullseye:(0.1.7-3) simple, fast interval searches for nim www

  • njplot

    Bookworm & Bullseye:(2.4-9) phylogenetic tree drawing program www

  • norsnet

    Bookworm:(1.0.17-7) Bullseye:(1.0.17-6) tool to identify unstructured loops in proteins www

  • norsp

    Bookworm:(1.0.6-7) Bullseye:(1.0.6-6) predictor of non-regular secondary structure www

  • nrn-mod2c

    Bookworm:(0.9+git220919-2) NMODL to C converter for CoreNEURON www

  • ntcard

    Bookworm:(1.2.2+dfsg-4) Streaming algorithm to estimate cardinality in genomics datasets www

  • nthash

    Bookworm:(2.2.0-2) Methods to evaluate runtime and uniformity tests for hashing methods www

  • numdiff

    Bookworm & Bullseye:(5.9.0-1) Compare similar files with numeric fields www

  • nutsqlite

    Bookworm & Bullseye:(2.0.6-3) Dietary nutrition analysis software www

  • nwchem

    Bookworm:(7.0.2-4) Bullseye:(7.0.2-1) High-performance computational chemistry software (default MPI) www

  • nwchem-data

    Bookworm:(7.0.2-4) Bullseye:(7.0.2-1) High-performance computational chemistry software (data files) www

  • nwchem-mpich

    Bookworm:(7.0.2-4) High-performance computational chemistry software (MPICH build) www

  • nwchem-openmpi

    Bookworm:(7.0.2-4) High-performance computational chemistry software (OpenMPI build) www

  • nxtrim

    Bookworm:(0.4.3+dfsg-3) Optimized trimming of Illumina mate pair reads www
  • Back to top

  • O

  • oar-web-status

    Bookworm & Bullseye:(2.5.9-1) OAR batch scheduler visualization tool package www

  • occt-draw

    Bookworm:(7.6.3+dfsg1-7+rpi1) Bullseye:(7.5.1+dfsg1-2+rpi1) Open CASCADE Technology command interpreter and graphical test system www

  • oce-draw

    Bookworm:(0.18.3-2+b1) Bullseye:(0.18.3-1) OpenCASCADE Community Edition CAE platform shared library www

  • octave-bart

    Bookworm:(0.8.00-3) Bullseye:(0.6.00-3+deb11u1) Octave bindings for BART www

  • octave-biosig

    Bookworm:(2.5.0-1) Bullseye:(2.1.2-4) Octave bindings for BioSig library www

  • octave-brain2mesh

    Bookworm & Bullseye:(0.7.9-2) automated brain tetrahedral mesh generation toolbox for Octave www

  • octave-gdf

    Bookworm:(0.1.3-11) Bullseye:(0.1.3-8) IO library for the GDF -- Octave interface www

  • octave-iso2mesh

    Bookworm:(1.9.6+ds-7) Bullseye:(1.9.6+ds-5) 3D surface and volumetric mesh generator for Octave www

  • octave-jnifti

    Bookworm & Bullseye:(0.6-2) fast NIfTI-1/2 reader and NIfTI-to-JNIfTI converter www

  • octave-jsonlab

    Bookworm:(2.0-2) Bullseye:(2.0-1.1) native JSON/UBJSON/MassagePack encoder/decoder for Octave www

  • octave-psychtoolbox-3

    Bookworm:(3.0.18.12.dfsg1-1.1) Bullseye:(3.0.17.9.dfsg1-2) toolbox for vision research -- Octave bindings www

  • octave-zmat

    Bookworm:(0.9.8+ds-8) Bullseye:(0.9.8+ds-3) in-memory data compression for Octave www

  • octomap-tools

    Bookworm:(1.9.7+dfsg-3) Bullseye:(1.9.5+dfsg-1) Tools for 3D occupancy grid mapping www

  • octovis

    Bookworm:(1.9.7+dfsg-3) Bullseye:(1.9.5+dfsg-1) Visualization tool for OctoMap www

  • odil

    Bookworm:(0.12.2-2) Bullseye:(0.12.1-1) C++11 library for the DICOM standard (application) www

  • odin

    Bookworm:(2.0.5-3+b1) Bullseye:(2.0.4-3) develop, simulate and run magnetic resonance sequences www

  • ogdi-bin

    Bookworm:(4.1.0+ds-6) Bullseye:(4.1.0+ds-5) Open Geographic Datastore Interface Library -- utilities www

  • ompl-plannerarena

    Bookworm & Bullseye:(1.5.2+ds1-1) Open Motion Planning Library (OMPL) plannerarena www

  • ont-fast5-api

    Bookworm:(4.1.1+dfsg-2+rpi1) simple interface to HDF5 files of the Oxford Nanopore .fast5 file format www

  • open3d-gui

    Bookworm:(0.16.1+ds-2+b2) Library for 3D data processing - GUI www

  • open3d-gui-data

    Bookworm:(0.16.1+ds-2) Library for 3D data processing - GUI resources www

  • open3d-tools

    Bookworm:(0.16.1+ds-2+b2) Library for 3D data processing - tools www

  • openbabel

    Bookworm:(3.1.1+dfsg-9+b2) Bullseye:(3.1.1+dfsg-6) Chemical toolbox utilities (cli) www

  • openbabel-gui

    Bookworm:(3.1.1+dfsg-9+b2) Bullseye:(3.1.1+dfsg-6) Chemical toolbox utilities (graphical user interface) www

  • opendrop

    Bookworm:(3.3.1-5) Bullseye:(3.1.7dev0-2) fully-featured pendant drop tensiometry software www

  • openfoam

    Bookworm:(1912.200626-1+b1) Bullseye:(1912.200626-1) Open source toolbox for Computational Fluid Dynamics (CFD) - binaries www

  • openfoam-examples

    Bookworm & Bullseye:(1912.200626-1) Open source toolbox for Computational Fluid Dynamics (CFD) - examples www

  • openmolar

    Bookworm & Bullseye:(1.0.15-gd81f9e5-1) dental practice management software www

  • openmolcas-data

    Bookworm:(22.10-1) Bullseye:(20.10-2) Quantum chemistry software package (data files) www

  • openmotor

    Bookworm:(0.5.0-2) Bullseye:(0.4.0-4) internal ballistics simulator for rocket motor experimenters www

  • openms

    Bookworm & Bullseye:(2.6.0+cleaned1-3) package for LC/MS data management and analysis www

  • openms-common

    Bookworm & Bullseye:(2.6.0+cleaned1-3) package for LC/MS data management and analysis - shared data www

  • openmx

    Bookworm & Bullseye:(3.8.5+dfsg1-1) package for nano-scale material simulations www

  • openmx-data

    Bookworm & Bullseye:(3.8.5+dfsg1-1) package for nano-scale material simulations (data) www

  • openrocket

    Bookworm & Bullseye:(15.03.5) Model Rocket Simulator www

  • openturns-common

    Bookworm:(1.20-9) generic tool to treat and quantify uncertainties (common files) www

  • openuniverse

    Bookworm:(1.0beta3.1+dfsg-7.1) Bullseye:(1.0beta3.1+dfsg-6.1) 3D Universe Simulator www

  • openuniverse-common

    Bookworm:(1.0beta3.1+dfsg-7.1) Bullseye:(1.0beta3.1+dfsg-6.1) 3D Universe Simulator data files www

  • opj2dat

    Bookworm & Bullseye:(20080225-2.2) OriginLab Origin project files to data files converter www

  • optgeo

    Bookworm & Bullseye:(2.25-2) simulator for geometrical optics www

  • opticalraytracer

    Bookworm & Bullseye:(9.6-1) Virtual lens/mirror design workshop www

  • optimir

    Bookworm:(1.2-1) Bullseye:(1.0-3) Integrating genetic variations in miRNA alignment www

  • origami

    Bookworm & Bullseye:(1.2.7+really0.7.4-1.1) command-line management tool for Folding @ Home clients www

  • orthanc

    Bookworm:(1.10.1+dfsg-2+deb12u1) Bullseye:(1.9.2+really1.9.1+dfsg-1+deb11u1) Lightweight, RESTful DICOM server for medical imaging www

  • orthanc-dicomweb

    Bookworm:(1.7+dfsg-6) Bullseye:(1.5+dfsg-3) Plugin to extend Orthanc with support of WADO and DICOMweb www

  • orthanc-gdcm

    Bookworm:(1.5-1+b3) Bullseye:(1.2-1) DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k) www

  • orthanc-imagej

    Bookworm & Bullseye:(1.2+dfsg-3) ImageJ plugin to import images from Orthanc www

  • orthanc-mysql

    Bookworm:(4.3-3+b3) Bullseye:(3.0-1) Plugins to use MySQL or MariaDB as a database back-end to Orthanc www

  • orthanc-neuro

    Bookworm:(1.0-1+b2) Neuroimaging plugin for Orthanc www

  • orthanc-postgresql

    Bookworm:(4.0-7+b1) Bullseye:(3.3-1) Plugins to use PostgreSQL as a database back-end to Orthanc www

  • orthanc-python

    Bookworm:(4.0+ds-1+b3) Bullseye:(3.1+ds-1) Develop plugins for Orthanc using the Python programming language www

  • orthanc-webviewer

    Bookworm:(2.8-2+b1) Bullseye:(2.7-4) Web viewer of medical images for Orthanc www

  • orthanc-wsi

    Bookworm:(1.1-4+b3) Bullseye:(1.0-3) Whole-slide imaging support for Orthanc (digital pathology) www

  • ortools-examples

    Bookworm:(8.2+ds-6) Google Optimization Tools (examples) www

  • oscar

    Bookworm:(1.4.0-1) Bullseye:(1.2.0-1) Open Source CPAP Analysis Reporter (OSCAR) www

  • osra

    Bookworm:(2.1.3-3) optical structure recognition www

  • ossim-core

    Bookworm:(2.9.1-3+b3) Bullseye:(2.9.1-3+b1) OSSIM core utilities www

  • otf-trace

    Bookworm & Bullseye:(1.12.5+dfsg-8) Open Trace Format support library - development files www

  • otf2-tools

    Bookworm:(3.0.2-2) Open Trace Format support library - tools www
  • Back to top

  • P

  • packmol

    Bookworm:(1:20.14.0-1) Bullseye:(20.010-1) Initial configurations for Molecular Dynamics Simulations www

  • paje.app

    Bookworm:(1.98-1.1) Bullseye:(1.98-1+b9) generic visualization tool (Gantt chart and more)

  • pal2nal

    Bookworm & Bullseye:(14.1-3) converts proteins to genomic DNA alignment www

  • paml

    Bookworm:(4.9j+dfsg-4) Bullseye:(4.9j+dfsg-3) Phylogenetic Analysis by Maximum Likelihood (PAML) www

  • pan-config

    Bookworm:(0.4) PAN Blend config package www

  • pan-tasks

    Bookworm:(0.4) PAN Blends tasks for tasksel www

  • paraclu

    Bookworm:(10-1) Bullseye:(9-3) Parametric clustering of genomic and transcriptomic features www

  • parafly

    Bookworm:(0.1.0-4) Bullseye:(0.1.0-2) parallel command processing using OpenMP www

  • parasail

    Bookworm:(2.6+dfsg-1) Bullseye:(2.4.3+dfsg-2) Aligner based on libparasail www

  • parsinsert

    Bookworm:(1.04-12) Bullseye:(1.04-10) Parsimonious Insertion of unclassified sequences into phylogenetic trees www

  • parsinsert-testdata

    Bookworm:(1.04-12) Bullseye:(1.04-10) Test data for parsinsert www

  • parsnp

    Bookworm:(1.7.4+dfsg-2) Bullseye:(1.5.4+dfsg-1) rapid core genome multi-alignment www

  • patman

    Bookworm:(1.2.2+dfsg-8) Bullseye:(1.2.2+dfsg-7) rapid alignment of short sequences to large databases www

  • pbbamtools

    Bookworm & Bullseye:(1.0.6+dfsg-2+rpi1) processing Pacific Biosciences binary alignment/map files www

  • pbhoney

    Bookworm & Bullseye:(15.8.24+dfsg-7) genomic structural variation discovery www

  • pbjelly

    Bookworm & Bullseye:(15.8.24+dfsg-7) genome assembly upgrading tool www

  • pbsim

    Bookworm:(1.0.3+git20180330.e014b1d+dfsg-3) Bullseye:(1.0.3+git20180330.e014b1d+dfsg-2) simulator for PacBio sequencing reads www

  • pcl-tools

    Bookworm:(1.13.0+dfsg-3+rpi1) Bullseye:(1.11.1+dfsg-1) Point Cloud Library - point cloud processing tools www

  • pdb-tools

    Bookworm:(2.5.0-2) tools for manipulating and editing PDB files www

  • pdb2pqr

    Bookworm:(3.5.2+dfsg-3) Bullseye:(2.1.1+dfsg-7+deb11u1) Preparation of protein structures for electrostatics calculations www

  • perlprimer

    Bookworm & Bullseye:(1.2.4-2) Graphical design of primers for PCR www

  • perm

    Bookworm:(0.4.0-8) Bullseye:(0.4.0-7) efficient mapping of short reads with periodic spaced seeds

  • phast

    Bookworm:(1.6+dfsg-3) Bullseye:(1.5+dfsg-2) phylogenetic analysis with space/time models www

  • phipack

    Bookworm & Bullseye:(0.0.20160614-5) PHI test and other tests of recombination www

  • phy-spread

    Bookworm & Bullseye:(1.0.3-1) analyze and visualize phylogeographic reconstructions www

  • phybin

    Bookworm:(0.3-6) Bullseye:(0.3-5) binning/clustering newick trees by topology www

  • phylip

    Bookworm & Bullseye:(1:3.697+dfsg-2) package of programs for inferring phylogenies www

  • phylonium

    Bookworm:(1.6-1) Bullseye:(1.3-1) Fast and Accurate Estimation of Evolutionary Distances www

  • phyml

    Bookworm:(3:3.3.20220408-3) Bullseye:(3:3.3.20200621-1) Phylogenetic estimation using Maximum Likelihood www

  • physamp

    Bookworm:(1.1.0-4) Bullseye:(1.1.0-2) sample sequence alignment corresponding to phylogeny www

  • phyutility

    Bookworm:(2.7.3+dfsg-4) Bullseye:(2.7.3+dfsg-3) simple analyses or modifications on both phylogenetic trees and data matrices www

  • phyx

    Bookworm:(1.3+ds-2) Bullseye:(1.01+ds-2+deb11u1) UNIX-style phylogenetic analyses on trees and sequences www

  • picard-tools

    Bookworm:(2.27.5+dfsg-2) Bullseye:(2.24.1+dfsg-1) Command line tools to manipulate SAM and BAM files www

  • picopore

    Bookworm & Bullseye:(1.2.0-2) lossless compression of Nanopore files www

  • picosat

    Bookworm & Bullseye:(965-2) SAT solver with proof and core support www

  • pigx-rnaseq

    Bookworm:(0.1.0-1.1) Bullseye:(0.0.10+ds-2) pipeline for checkpointed and distributed RNA-seq analyses www

  • piler

    Bookworm & Bullseye:(0~20140707-3) genomic repeat analysis www

  • pilercr

    Bookworm:(1.06+dfsg-5) Bullseye:(1.06+dfsg-4) software for finding CRISPR repeats www

  • pilon

    Bookworm:(1.24-2) Bullseye:(1.23+dfsg-2) automated genome assembly improvement and variant detection tool www

  • pinfish-examples

    Bookworm:(0.1.0+ds-3) Bullseye:(0.1.0+ds-2) Examples and test data for pinfish www

  • pique

    Bookworm:(1.0-6) Bullseye:(1.0-2) software pipeline for performing genome wide association studies www

  • pirs

    Bookworm:(2.0.2+dfsg-11) Bullseye:(2.0.2+dfsg-9) Profile based Illumina pair-end Reads Simulator www

  • pirs-examples

    Bookworm:(2.0.2+dfsg-11) Bullseye:(2.0.2+dfsg-9) profile basd Illumina pair-end Reads Simulator (example data) www

  • pirs-profiles

    Bookworm:(2.0.2+dfsg-11) Bullseye:(2.0.2+dfsg-9) profile basd Illumina pair-end Reads Simulator (profile data) www

  • pizzly

    Bookworm:(0.37.3+ds-9) Bullseye:(0.37.3+ds-5) Identifies gene fusions in RNA sequencing data www

  • pkg-r-autopkgtest

    Bookworm:(20230121) Bullseye:(20210303) Script for the automatic testing of R packages

  • pktools

    Bookworm:(2.6.7.6+ds-4) Bullseye:(2.6.7.6+ds-3+b1) GDAL add-on tools to perform useful raster processing www

  • placnet

    Bookworm:(1.04-1) Bullseye:(1.03-3) Plasmid Constellation Network project www

  • planetary-system-stacker

    Bookworm:(0.8.32~git20221019.66d7558-2) create a sharp image of a planetary system object (moon, sun, planets) www

  • planets

    Bookworm & Bullseye:(0.1.13-20) Gravitation simulation of planetary bodies www

  • plasmidseeker

    Bookworm:(1.3+dfsg-3) Bullseye:(1.3+dfsg-1) identification of known plasmids from whole-genome sequencing reads www

  • plast

    Bookworm:(2.3.2+dfsg-10) Bullseye:(2.3.2+dfsg-7) Parallel Local Sequence Alignment Search Tool www

  • plast-example

    Bookworm:(2.3.2+dfsg-10) Bullseye:(2.3.2+dfsg-7) Parallel Local Sequence Alignment Search Tool (example data) www

  • plink

    Bookworm:(1.07+dfsg-4) Bullseye:(1.07+dfsg-3) whole-genome association analysis toolset www

  • plink1.9

    Bookworm:(1.90~b6.26-220402-1) Bullseye:(1.90~b6.21-201019-1) whole-genome association analysis toolset www

  • pluto-jpl-eph

    Bookworm & Bullseye:(0.0~git20180228-1.1) command line handling of JPL ephemeres data www

  • pluto-lunar

    Bookworm & Bullseye:(0.0~git20180825.e34c1d1-1) routines for predictions of positions in solar system www

  • poa

    Bookworm & Bullseye:(2.0+20060928-8) Partial Order Alignment for multiple sequence alignment www

  • populations

    Bookworm & Bullseye:(1.2.33+svn0120106+dfsg-6) population genetic software www

  • porechop

    Bookworm:(0.2.4+dfsg-4) Bullseye:(0.2.4+dfsg-2) adapter trimmer for Oxford Nanopore reads www

  • poretools

    Bookworm:(0.6.0+dfsg-6) Bullseye:(0.6.0+dfsg-5) toolkit for nanopore nucleotide sequencing data www

  • poretools-data

    Bookworm:(0.6.0+dfsg-6) Bullseye:(0.6.0+dfsg-5) toolkit for nanopore nucleotide sequencing data -- sample datasets www

  • pp-popularity-contest

    Bookworm:(1.0.6-4+b7) Bullseye:(1.0.6-4+b6) PredictProtein popularity contest www

  • praat

    Bookworm:(6.3.07-1) Bullseye:(6.1.38-1) program for speech analysis and synthesis www

  • prank

    Bookworm & Bullseye:(0.0.170427+dfsg-3) Probabilistic Alignment Kit for DNA, codon and amino-acid sequences www

  • predictnls

    Bookworm:(1.0.20-8) Bullseye:(1.0.20-6) prediction and analysis of protein nuclear localization signals www

  • prime-phylo

    Bookworm:(1.0.11-10) Bullseye:(1.0.11-9) bayesian estimation of gene trees taking the species tree into account www

  • primer3

    Bookworm:(2.6.1-4) Bullseye:(2.4.0-4) tool to design flanking oligo nucleotides for DNA amplification www

  • primer3-examples

    Bookworm:(2.6.1-4) Bullseye:(2.4.0-4) tool to design flanking oligo nucleotides for DNA amplification (examples) www

  • prinseq-lite

    Bookworm & Bullseye:(0.20.4-6) PReprocessing and INformation of SEQuence data (lite version) www

  • prinseq-lite-examples

    Bookworm & Bullseye:(0.20.4-6) PReprocessing and INformation of SEQuence data (example data) www

  • proalign

    Bookworm & Bullseye:(0.603-5) Probabilistic multiple alignment program www

  • probabel

    Bookworm & Bullseye:(0.5.0+dfsg-4) Toolset for Genome-Wide Association Analysis www

  • probabel-examples

    Bookworm & Bullseye:(0.5.0+dfsg-4) Example files for ProbABEL www

  • probalign

    Bookworm:(1.4-10) Bullseye:(1.4-9) multiple sequence alignment using partition function posterior probabilities www

  • probcons

    Bookworm:(1.12-14) Bullseye:(1.12-13) PROBabilistic CONSistency-based multiple sequence alignment www

  • probcons-extra

    Bookworm:(1.12-14) Bullseye:(1.12-13) Extra programs from the probcons package www

  • proda

    Bookworm & Bullseye:(1.0-13) multiple alignment of protein sequences www

  • prodigal

    Bookworm:(1:2.6.3-6) Bullseye:(1:2.6.3-4) Microbial (bacterial and archaeal) gene finding program www

  • profbval

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) predictor of flexible/rigid protein residues from sequence www

  • profisis

    Bookworm:(1.0.11-7) Bullseye:(1.0.11-6) prediction of protein-protein interaction sites from sequence www

  • profnet-bval

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for profbval www

  • profnet-chop

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for profchop www

  • profnet-con

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for profcon www

  • profnet-isis

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for profisis www

  • profnet-md

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for metadisorder www

  • profnet-norsnet

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for norsnet www

  • profnet-prof

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for profacc www

  • profnet-snapfun

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for snapfun www

  • profphd

    Bookworm & Bullseye:(1.0.42-3) secondary structure and solvent accessibility predictor www

  • profphd-net

    Bookworm:(1.0.22-8) Bullseye:(1.0.22-7) neural network architecture for profphd www

  • profphd-utils

    Bookworm:(1.0.10-7) Bullseye:(1.0.10-6) profphd helper utilities convert_seq and filter_hssp www

  • proftmb

    Bookworm:(1.1.12-11) Bullseye:(1.1.12-9) per-residue prediction of bacterial transmembrane beta barrels www

  • progressivemauve

    Bookworm:(1.2.0+4713+dfsg-5+b1) Bullseye:(1.2.0+4713+dfsg-5) multiple genome alignment algorithms www

  • proj-bin

    Bookworm:(9.1.1-1+b1) Bullseye:(7.2.1-1) Cartographic projection library (tools) www

  • proj-rdnap

    Bookworm & Bullseye:(2008+2018-5) RDNAP grid correction files for PROJ www

  • promod3-data

    Bookworm:(3.2.1+ds-6) protein homology modelling engine - data files www

  • prooftree

    Bookworm & Bullseye:(0.13-2) proof-tree visualization for Proof General www

  • proteinortho

    Bookworm:(6.0.31+dfsg-1) Bullseye:(6.0.28+dfsg-1) Detection of (Co-)orthologs in large-scale protein analysis www

  • prottest

    Bookworm:(3.4.2+dfsg-8) Bullseye:(3.4.2+dfsg-5) selection of best-fit models of protein evolution www

  • provean

    Bookworm:(1.1.5+ds-2) Protein Variation Effect Analyzer www

  • pscan-chip

    Bookworm:(1.1-3+b1) Bullseye:(1.1-3) ChIP-based identifcation of TF binding sites www

  • pscan-chip-data

    Bookworm & Bullseye:(1.1-3) auxiliary data for PScan-ChIP www

  • pscan-tfbs

    Bookworm:(1.2.2-4+b1) Bullseye:(1.2.2-4) search for transcription factor binding sites www

  • psfex

    Bookworm:(3.21.1-1) Bullseye:(3.17.1+dfsg-6) Point Spread Function model extractor www

  • psi3

    Bookworm & Bullseye:(3.4.0-6+b1) Quantum Chemical Program Suite www

  • psi4

    Bookworm:(1:1.3.2+dfsg-5) Bullseye:(1:1.3.2+dfsg-2) Quantum Chemical Program Suite www

  • psi4-data

    Bookworm:(1:1.3.2+dfsg-5) Bullseye:(1:1.3.2+dfsg-2) Quantum Chemical Program Suite (data files) www

  • psychopy

    Bookworm:(2022.1.3+dfsg-1) Bullseye:(2020.2.10+dfsg-2) environment for creating psychology stimuli in Python www

  • psychtoolbox-3-common

    Bookworm:(3.0.18.12.dfsg1-1.1) Bullseye:(3.0.17.9.dfsg1-2) toolbox for vision research -- arch/interpreter independent part www

  • psychtoolbox-3-lib

    Bookworm:(3.0.18.12.dfsg1-1.1) Bullseye:(3.0.17.9.dfsg1-2) toolbox for vision research -- arch-specific parts www

  • pullseq

    Bookworm:(1.0.2-4) Extract sequence from a fasta or fastq www

  • pycoqc

    Bookworm:(2.5.2+dfsg-3) Bullseye:(2.5.2+dfsg-1) computes metrics and generates Interactive QC plots www

  • pyensembl

    Bookworm:(2.2.4+ds-1) installs data from the Ensembl genome database www

  • pyfai

    Bookworm:(0.21.3+dfsg1-4) Bullseye:(0.20.0+dfsg1-3) Fast Azimuthal Integration scripts www

  • pyfr

    Bookworm & Bullseye:(1.5.0-3) flux reconstruction in Python www

  • pymca

    Bookworm:(5.8.0+dfsg-2) Bullseye:(5.6.3+dfsg-1) Applications and toolkit for X-ray fluorescence analysis -- scripts www

  • pymca-data

    Bookworm:(5.8.0+dfsg-2) Bullseye:(5.6.3+dfsg-1) Architecture independent data files for PyMca www

  • pymoctool

    Bookworm & Bullseye:(0.5.0-5) Python Multi-Order Coverage maps tool for Virtual Observatory www

  • pymol

    Bookworm:(2.5.0+dfsg-1) Bullseye:(2.4.0+dfsg-2) Molecular Graphics System www

  • pymol-data

    Bookworm:(2.5.0+dfsg-1) Bullseye:(2.4.0+dfsg-2) data files for PyMOL www

  • pysatellites

    Bookworm & Bullseye:(2.6-1) simulates the launching of satellites

  • pyscanfcs

    Bookworm:(0.3.6+ds-4+b1) Bullseye:(0.3.6+ds-2+b1) scientific tool for perpendicular line scanning FCS www

  • pythia8-data

    Bookworm & Bullseye:(8.1.86-1.2) PYTHIA8 data files www

  • python-drizzle-testdata

    Bookworm:(1.13.4-1) Bullseye:(1.13.1-2) Dithered image combination for Python (Test data) www

  • python-escript-doc

    Bookworm:(5.6-4) Bullseye:(5.6-3) Documentation for Escript/Finley www

  • python-pairix-examples

    Bookworm:(0.3.7-6) Bullseye:(0.3.7-3) 1D/2D indexing and querying with a pair of genomic coordinates (examples) www

  • python3-airr

    Bookworm & Bullseye:(1.3.1-1) Data Representation Standard library for antibody and TCR sequences www

  • python3-amp

    Bookworm:(0.6.1-1+b4) Bullseye:(0.6.1-1+b2) Atomistic Machine-learning Package (python 3) www

  • python3-bioframe

    Bookworm:(0.3.3-2) library to enable flexible, scalable operations on genomic interval dataframes www

  • python3-bornagain

    Bookworm:(1.19.0-3+b4) Simulate and fit X-ray and neutron GISAS -- Python3 www

  • python3-cif2cell

    Bookworm:(2.0.0a5+dfsg-1) Bullseye:(2.0.0a1+dfsg-3) prepare CIF files for electronic structure calculations www

  • python3-datacache

    Bookworm:(1.2.1-1) helpers for transparently downloading datasets www

  • python3-dcmstack

    Bookworm:(0.9-1) DICOM to NIfTI conversion - python3 package www

  • python3-deeptools

    Bookworm:(3.5.1-3) Bullseye:(3.5.0-1) platform for exploring biological deep-sequencing data www

  • python3-dnapilib

    Bookworm & Bullseye:(1.1-3) adapter prediction for small RNA sequencing - library www

  • python3-emperor

    Bookworm:(1.0.3+ds-7) visualizing high-throughput microbial community data www

  • python3-ffcv

    Bookworm:(0.0.3-2) Fast Forward Computer Vision (and other ML workloads) www

  • python3-freesas

    Bookworm:(0.9.0-6) Python libraries for small angle scattering tools www

  • python3-geneimpacts

    Bookworm:(0.3.7-4) Bullseye:(0.3.7-3) wraps command line tools to assess variants in gene sequences www

  • python3-gffutils

    Bookworm:(0.11.1-3) Bullseye:(0.10.1-2) Work with GFF and GTF files in a flexible database framework www

  • python3-gtfparse

    Bookworm:(1.3.0+ds-1) parser for gene transfer format (aka GFF2) www

  • python3-harmonypy

    Bookworm:(0.0.9-1) is a data integration algorithm www

  • python3-jupyter-sphinx

    Bookworm & Bullseye:(0.2.3-1) Jupyter Sphinx Extension - Python3 www

  • python3-louvain

    Bookworm:(0.0+20181013git3fc1f575-2) community graph analysis implementing Louvain method www

  • python3-mmtf

    Bookworm:(1.1.3-1) Bullseye:(1.1.2-3) binary encoding of biological structures (Python 3) www

  • python3-morse-simulator

    Bookworm:(1.4-8) Multi-OpenRobot Simulation Engine www

  • python3-mpiplus

    Bookworm:(0.0.1-2) Python GPU framework for alchemical free energy calculations (Python 3) www

  • python3-nanostat

    Bookworm & Bullseye:(1.4.0-3) statistics on long biological sequences www

  • python3-navarp

    Bookworm:(1.3.0-1) Navigation tool for ARPES data (Python 3) www

  • python3-noise

    Bookworm:(1.2.3-4+b1) Bullseye:(1.2.3-3+b1) Perlin noise for image generation www

  • python3-onnx

    Bookworm:(1.12.0-2+b2) Bullseye:(1.7.0+dfsg-3) Open Neural Network Exchange (ONNX) (Python) www

  • python3-pdbtools

    Bookworm:(2.5.0-2) tools for manipulating and editing PDB files (Python 3 package) www

  • python3-peptidebuilder

    Bookworm:(1.1.0-3) Bullseye:(1.1.0-2) generate atomic oligopeptide 3D structure from sequence www

  • python3-prodigy

    Bookworm:(2.1.2-1) Protein Binding Affinity Prediction (Python 3) www

  • python3-prody

    Bookworm:(2.3.1+dfsg-3) Python package for protein dynamics analysis www

  • python3-prody-tests

    Bookworm:(2.3.1+dfsg-3) Python package for protein dynamics analysis - test data www

  • python3-propka

    Bookworm:(3.5.0-1) heuristic pKa calculations with ligands (Python 3) www

  • python3-pybel

    Bookworm & Bullseye:(0.14.10-1) Biological Expression Language www

  • python3-pybigwig

    Bookworm:(0.3.18+dfsg-1+b3) Bullseye:(0.3.17-1+b2) Python 3 module for quick access to bigBed and bigWig files www

  • python3-pyimagetool

    Bookworm:(1.0-2) Image Tool for multidimensional analysis (Python 3) www

  • python3-pymbar

    Bookworm:(3.1.0-4) Python implementation of the multistate Bennett acceptance ratio (MBAR) www

  • python3-pynlpl

    Bookworm & Bullseye:(1.2.9-1) PyNLPl is a library for Natural Language Processing (Python 3 version) www

  • python3-pyxrd

    Bookworm:(0.8.4-3) modeling of X-ray diffraction (XRD) patterns of disordered lamellar structures www

  • python3-qiskit-aer

    Bookworm:(0.4.1-2+rpi1) Quantum Information Science Kit (Qiskit): Aer www

  • python3-qiskit-ibmq-provider

    Bookworm:(0.4.6-4) Bullseye:(0.4.6-3) Quantum Information Science Kit (Qiskit): IBM Q Provider www

  • python3-qiskit-terra

    Bookworm:(0.12.0-4+rpi1) Bullseye:(0.12.0-2.1+b1) Quantum Information Science Kit (Qiskit) for Python 3 www

  • python3-seqcluster

    Bookworm:(1.2.9+ds-3) Bullseye:(1.2.7+ds-1) analysis of small RNA in NGS data www

  • python3-skorch

    Bookworm:(0.12.1-2) Bullseye:(0.9.0-3) scikit-learn compatible neural network library that wraps PyTorch www

  • python3-weblogo

    Bookworm:(3.7.12-5) sequence logo generator www

  • python3-xeus-python-shell

    Bookworm:(0.14.3+~0.5.0-3) Native jupyter kernel for python (python library) www

  • python3-xraydb

    Bookworm:(4.4.7+ds1-3) X-ray Reference Data (Python 3) www

  • python3-xrt

    Bookworm:(1.4.0-2) XRay Tracer and wave propagation (Python 3) www

  • pyzo

    Bookworm:(4.12.3-1) Bullseye:(4.11.2-1) interactive editor for scientific Python www
  • Back to top

  • Q

  • q2-alignment

    Bookworm:(2022.11.1-2) Bullseye:(2020.11.1-2) QIIME 2 plugin for generating and manipulating alignments www

  • q2-demux

    Bookworm:(2022.11.1+dfsg-2) Bullseye:(2020.11.1-1) QIIME 2 plugin for demultiplexing of sequence reads www

  • q2-diversity-lib

    Bookworm:(2022.11.1-2) QIIME2 plugin to expose diversity metrics/measures as actions www

  • q2-emperor

    Bookworm:(2022.11.1-2) QIIME2 plugin for display of ordination plots www

  • q2-feature-classifier

    Bookworm:(2022.11.1-2) Bullseye:(2020.11.1-2) QIIME 2 plugin supporting taxonomic classification www

  • q2-feature-table

    Bookworm:(2022.11.1+dfsg-2) Bullseye:(2020.11.1+dfsg-1) QIIME 2 plugin supporting operations on feature tables www

  • q2-quality-control

    Bookworm:(2022.11.1-2) Bullseye:(2020.11.1-3) QIIME 2 plugin for quality assurance of feature and sequence data www

  • q2-quality-filter

    Bookworm:(2022.11.1-2) Bullseye:(2020.11.1-2) QIIME2 plugin for PHRED-based filtering and trimming www

  • q2-sample-classifier

    Bookworm:(2022.11.1-3) Bullseye:(2020.11.1-3) QIIME 2 plugin for machine learning prediction of sample data www

  • q2-taxa

    Bookworm:(2022.11.1+dfsg-2) Bullseye:(2020.11.1+dfsg-2) QIIME 2 plugin for working with feature taxonomy annotations www

  • q2-types

    Bookworm:(2022.11.1-2) Bullseye:(2020.11.1-1) QIIME 2 plugin defining types for microbiome analysis www

  • q2cli

    Bookworm:(2022.11.1-2) Bullseye:(2020.11.1-1) Click-based command line interface for QIIME 2 www

  • q2templates

    Bookworm:(2022.11.1+ds-2) Bullseye:(2020.11.1+dfsg-1) Design template package for QIIME 2 Plugins www

  • qcat

    Bookworm:(1.1.0-6) Bullseye:(1.1.0-2) demultiplexing Oxford Nanopore reads from FASTQ files www

  • qcat-examples

    Bookworm:(1.1.0-6) Bullseye:(1.1.0-2) demultiplexing Oxford Nanopore reads from FASTQ files (examples) www

  • qcumber

    Bookworm & Bullseye:(2.3.0-2) quality control of genomic sequences www

  • qfits-tools

    Bookworm & Bullseye:(6.2.0-8+b1) FITS manipulation tools www

  • qfitsview

    Bookworm:(4.1+dfsg-1+b1) Bullseye:(4.0+dfsg-3+b2) FITS file viewer based on DPUSER www

  • qgis

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) Geographic Information System (GIS) www

  • qgis-api-doc

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) QGIS API documentation www

  • qgis-common

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) QGIS - architecture-independent data www

  • qgis-plugin-grass

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) GRASS plugin for QGIS www

  • qgis-plugin-grass-common

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) GRASS plugin for QGIS - architecture-independent data www

  • qgis-provider-grass

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) GRASS provider for QGIS www

  • qgis-providers

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) collection of data providers to QGIS www

  • qgis-providers-common

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) collection of data providers to QGIS - architecture-independent files www

  • qgis-server

    Bookworm:(3.22.16+dfsg-1) Bullseye:(3.10.14+dfsg-1) QGIS server providing various OGC services www

  • qgis-server-bin

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (executables) www

  • qgis-server-common

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (data) www

  • qgis-server-dummy

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (dummy) www

  • qgis-server-landingpage

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (landing page) www

  • qgis-server-wcs

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (WCS) www

  • qgis-server-wfs

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (WFS) www

  • qgis-server-wfs3

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (WFS 3) www

  • qgis-server-wms

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (WMS) www

  • qgis-server-wmts

    Bookworm:(3.22.16+dfsg-1) QGIS server providing various OGC services (WMTS) www

  • qgis3-survex-import

    Bookworm:(1.3-1) Bullseye:(1.2-1) QGIS3 plugin to read survex 3d files, for cave surveying www

  • qiime

    Bookworm:(2022.11.1-2) Bullseye:(2020.11.1-1) Quantitative Insights Into Microbial Ecology www

  • qmc

    Bookworm:(0.94-4.1) Bullseye:(0.94-3.1) Quine McClusky Simplification Tool

  • qrisk2

    Bookworm & Bullseye:(0.1.20150729-5) cardiovascular disease risk calculator www

  • qthid-fcd-controller

    Bookworm:(4.1-6) Bullseye:(4.1-5) Funcube Dongle controller www

  • qtltools

    Bookworm:(1.3.1+dfsg-4) Bullseye:(1.3.1+dfsg-2) Tool set for molecular QTL discovery and analysis www

  • quantum-espresso

    Bookworm:(6.7-2+b1) Bullseye:(6.7-2) Electronic-Structure and Ab-Initio Molecular Dynamics Suite www

  • quantum-espresso-data

    Bookworm & Bullseye:(6.7-2) Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation) www

  • quicktree

    Bookworm & Bullseye:(2.5-5) Neighbor-Joining algorithm for phylogenies www

  • quitcount

    Bookworm & Bullseye:(3.1.4-3) Small tool which may help yourself quit smoking www

  • qutemol

    Bookworm:(0.4.1~cvs20081111-15) Bullseye:(0.4.1~cvs20081111-13) interactive visualization of macromolecules www
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  • R

  • r-cran-shazam

    Bookworm:(1.1.2-1) Bullseye:(1.0.2-1) Immunoglobulin Somatic Hypermutation Analysis www

  • r-cran-tigger

    Bookworm:(1.0.1-1) Bullseye:(1.0.0-1) Infers new Immunoglobulin alleles from Rep-Seq Data www

  • raccoon

    Bookworm & Bullseye:(1.0b-5) preparation of in silico drug screening projects www

  • radiant

    Bookworm:(2.8.1+dfsg-2) Bullseye:(2.7.1+dfsg-4) explore hierarchical metagenomic data with zoomable pie charts www

  • ragout

    Bookworm:(2.3-4) Bullseye:(2.3-2) Reference-Assisted Genome Ordering UTility www

  • ragout-examples

    Bookworm:(2.3-4) Bullseye:(2.3-2) Reference-Assisted Genome Ordering UTility (example data) www

  • rambo-k

    Bookworm:(1.21+dfsg-4) Bullseye:(1.21+dfsg-3) Read Assignment Method Based On K-mers www

  • rampler

    Bookworm:(2.1.1-1) Bullseye:(2.0.0-1) module for sampling genomic sequences www

  • rapmap-dev

    Bookworm:(0.15.0+dfsg-3) Bullseye:(0.15.0+dfsg-1) rapmap - rapid sensitive and accurate DNA read mapping (some headers) www

  • rapmap-example-data

    Bookworm:(0.15.0+dfsg-3) Bullseye:(0.15.0+dfsg-1) example data for rapmap - rapid sensitive and accurate DNA read mapping www

  • rasmol

    Bookworm:(2.7.6.0-3) Bullseye:(2.7.6.0-2) visualization of biological macromolecules www

  • raster3d

    Bookworm:(3.0-7-2+b1) Bullseye:(3.0-7-2) tools for generating images of proteins or other molecules www

  • rate4site

    Bookworm:(3.0.0-8) Bullseye:(3.0.0-7) detector of conserved amino-acid sites www

  • rawtran

    Bookworm:(1.1-1+b3) Bullseye:(1.1-1+b2) RAW photo to FITS converter www

  • raxml

    Bookworm:(8.2.12+dfsg-8) Bullseye:(8.2.12+dfsg-6) Randomized Axelerated Maximum Likelihood of phylogenetic trees www

  • ray

    Bookworm & Bullseye:(2.3.1-7) de novo genome assemblies of next-gen sequencing data www

  • ray-extra

    Bookworm & Bullseye:(2.3.1-7) Scripts and XSL sheets for post-processing for ray www

  • rdkit-data

    Bookworm:(202209.3-1) Bullseye:(202009.4-1) Collection of cheminformatics and machine-learning software (data files) www

  • rdp-classifier

    Bookworm:(2.10.2-6) Bullseye:(2.10.2-5) extensible sequence classifier for fungal lsu, bacterial and archaeal 16s www

  • readseq

    Bookworm & Bullseye:(1-14) Conversion between sequence formats www

  • readucks

    Bookworm:(0.0.3-5) Bullseye:(0.0.3-2) Nanopore read de-multiplexer (read demux -> readux -> readucks, innit) www

  • reapr

    Bookworm:(1.0.18+dfsg-5+b1) Bullseye:(1.0.18+dfsg-5) universal tool for genome assembly evaluation www

  • recan

    Bookworm:(0.1.5+dfsg-2) Bullseye:(0.1.2-2) genetic distance plotting for recombination events analysis www

  • refmac-dictionary

    Bookworm & Bullseye:(5.41-2) dictionary for macromolecular refinement and model building www

  • relion

    Bookworm:(3.1.3-3+b1) toolkit for 3D reconstructions in cryo-electron microscopy www

  • relion-gui

    Bookworm:(3.1.3-3+b1) toolkit for 3D reconstructions in cryo-electron microscopy (gui apps) www

  • repeatmasker-recon

    Bookworm:(1.08-7+b3) Bullseye:(1.08-6) finds repeat families from biological sequences www

  • reprof

    Bookworm:(1.0.1-8) Bullseye:(1.0.1-7) protein secondary structure and accessibility predictor www

  • resfinder

    Bookworm:(4.3.0-1) Bullseye:(3.2-3) identify acquired antimicrobial resistance genes www

  • resfinder-db

    Bookworm:(0.0+git20220524.fa32d9a-1) Bullseye:(0.0+git20200408.0322c0d-1) ResFinder database is a curated database of acquired resistance genes www

  • resfinder-example

    Bookworm:(4.3.0-1) Bullseye:(3.2-3) identify acquired antimicrobial resistance genes (example data) www

  • rnahybrid

    Bookworm:(2.1.2-7) Bullseye:(2.1.2-6) Fast and effective prediction of microRNA/target duplexes www

  • roary

    Bookworm & Bullseye:(3.13.0+dfsg-1) high speed stand alone pan genome pipeline www

  • rocketcea

    Bookworm:(1.1.18+dfsg-3+b1) Bullseye:(1.1.18+dfsg-2) NASA Chemical Equilibrium, wrapped in Python www

  • rockhopper

    Bookworm:(2.0.3+dfsg2-3) system for analyzing bacterial RNA-seq data www

  • roguenarok

    Bookworm:(1.0.1-3) Bullseye:(1.0-4) versatile and scalable algorithm for rogue taxon identification www

  • routine-update

    Bookworm:(0.1.1) Bullseye:(0.0.6) routine updater for a Debian source package www

  • rtax

    Bookworm:(0.984-8) Bullseye:(0.984-7) Classification of sequence reads of 16S ribosomal RNA gene www

  • rtklib

    Bookworm:(2.4.3.b34+dfsg-1) Bullseye:(2.4.3+dfsg1-2.1) RTK and other advanced GNSS positioning techniques -- CLI www

  • rtklib-qt

    Bookworm:(2.4.3.b34+dfsg-1) Bullseye:(2.4.3+dfsg1-2.1) RTK and other advanced GNSS positioning techniques -- Qt GUI www

  • ruby-rgfa

    Bookworm & Bullseye:(1.3.1+dfsg-2) parse, edit and write GFA format graphs in Ruby www

  • runcircos-gui

    Bookworm & Bullseye:(0.0+git20200528.82dda8c-1) GUI tool to run circos www
  • Back to top

  • S

  • sac2mseed

    Bookworm:(1.13+ds1-1) Bullseye:(1.12+ds1-3) Convert SAC waveform data to MiniSEED www

  • saga

    Bookworm:(8.5.0+dfsg-2+b1) Bullseye:(7.3.0+dfsg-5) System for Automated Geoscientific Analyses www

  • saga-common

    Bookworm:(8.5.0+dfsg-2) Bullseye:(7.3.0+dfsg-5) SAGA GIS architecture independent files www

  • saint

    Bookworm:(2.5.0+dfsg-4+b1) Bullseye:(2.5.0+dfsg-4) Significance Analysis of INTeractome www

  • salmid

    Bookworm:(0.1.23-5) Bullseye:(0.1.23-2) rapid Kmer based Salmonella identifier from sequence data www

  • samblaster

    Bookworm:(0.1.26-4) Bullseye:(0.1.26-1) marks duplicates, extracts discordant/split reads www

  • samclip

    Bookworm:(0.4.0-4) Bullseye:(0.4.0-2) filter SAM file for soft and hard clipped alignments www

  • samtools

    Bookworm:(1.16.1-1) Bullseye:(1.11-1) processing sequence alignments in SAM, BAM and CRAM formats www

  • samtools-test

    Bookworm:(1.16.1-1) Bullseye:(1.11-1) test files for the samtools package www

  • saods9

    Bookworm:(8.4.1+repack-3) Bullseye:(8.2+repack-2) Image display tool for astronomy www

  • sasview

    Bookworm:(5.0.5-5) Bullseye:(5.0.3-3) Small Angle Scattering Analysis suite www

  • sat4j

    Bookworm & Bullseye:(2.3.5-0.3) Efficient library of SAT solvers in Java www

  • savi

    Bookworm:(1.5.1-5) Bullseye:(1.5.1-4) satellite constellation visualisation www

  • savvy-util

    Bookworm:(2.1.0-2) conversion tool for SAV file format www

  • sbmltoolbox

    Bookworm & Bullseye:(4.1.0-5) libsbml toolbox for octave and matlab www

  • science-config

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Project config package www

  • science-dataacquisition-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science data acquisition development packages www

  • science-electronics

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Electronics transitional package www

  • science-engineering-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Engineering-dev packages www

  • science-highenergy-physics

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science High Energy Physics packages www

  • science-highenergy-physics-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science High Energy Physics development packages www

  • science-machine-learning

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Machine Learning packages www

  • science-mathematics-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Mathematics-dev packages www

  • science-meteorology-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Meteorology-dev packages www

  • science-nanoscale-physics

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Nanoscale Physics packages www

  • science-nanoscale-physics-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Nanoscale Physics development packages www

  • science-neuroscience-cognitive

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science packages for Cognitive Neuroscience www

  • science-neuroscience-modeling

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science packages for modeling of neural systems www

  • science-physics-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science Physics-dev packages www

  • science-robotics-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Robotics development packages www

  • science-tasks

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science tasks for tasksel www

  • science-viewing-dev

    Bookworm:(1.14.5) Bullseye:(1.14.2) Debian Science development of visualisation applications www

  • scoary

    Bookworm:(1.6.16-5) Bullseye:(1.6.16-2) pangenome-wide association studies www

  • scram

    Bookworm & Bullseye:(0.16.2-3) Probabilistic Risk Analysis Tool www

  • scram-gui

    Bookworm & Bullseye:(0.16.2-3) SCRAM GUI front-end www

  • scrappie

    Bookworm:(1.4.2-8) Bullseye:(1.4.2-7) basecaller for Nanopore sequencer www

  • scrm

    Bookworm & Bullseye:(1.7.4-1) simulator of evolution of genetic sequences www

  • sctk

    Bookworm & Bullseye:(2.4.10-20151007-1312Z+dfsg2-3.1) speech recognition scoring toolkit www

  • scythe

    Bookworm & Bullseye:(0.994+git20141017.20d3cff-3) Bayesian adaptor trimmer for sequencing reads www

  • sdaps

    Bookworm:(1.9.8-0.1+b4) Bullseye:(1.9.8-0.1+b1) scripts for data acquisition with paper-based surveys www

  • seaview

    Bookworm:(1:5.0.5-2) Bullseye:(1:5.0.4-1) Multiplatform interface for sequence alignment and phylogeny www

  • secrecy

    Bookworm:(0.0.5+ds-2) Bullseye:(0.0.2+dfsg-2) tool to handle libsecrecy keys and encrypted files www

  • seer

    Bookworm:(1.1.4-7) Bullseye:(1.1.4-5) genomic sequence element (kmer) enrichment analysis www

  • seesat5

    Bookworm & Bullseye:(0.90.10-1.1) a satellite location program

  • segemehl

    Bookworm:(0.3.4-5) Bullseye:(0.3.4-3) short read mapping with gaps www

  • segyio-bin

    Bookworm:(1.8.3-1.2) Bullseye:(1.8.3-1+b2) SEG-Y read/write library for seismic processing (shell utilities) www

  • sentencepiece

    Bookworm:(0.1.97-3+rpi1+b1) Bullseye:(0.1.95-1+rpi1) Unsupervised text tokenizer and detokenizer www

  • seqan-apps

    Bookworm:(2.4.0+dfsg-15) Bullseye:(2.4.0+dfsg-14) C++ library for the analysis of biological sequences www

  • seqan-raptor-doc

    Bookworm:(2.0.0.0.git.fecfbca+ds-3) HTML & PDF documentation for seqan-raptor and its APIs www

  • seqcluster

    Bookworm:(1.2.9+ds-3) Bullseye:(1.2.7+ds-1) analysis of small RNA in NGS data www

  • seqkit

    Bookworm:(2.3.1+ds-1) Bullseye:(0.15.0+ds-2) cross-platform and ultrafast toolkit for FASTA/Q file manipulation www

  • seqkit-examples

    Bookworm:(2.3.1+ds-1) Bullseye:(0.15.0+ds-2) examples for seqkit: toolkit for FASTA/Q file manipulation www

  • seqmagick

    Bookworm:(0.8.4-3) Bullseye:(0.8.4-1) imagemagick-like frontend to Biopython SeqIO www

  • seqprep

    Bookworm:(1.3.2-8) Bullseye:(1.3.2-5) stripping adaptors and/or merging paired reads of DNA sequences with overlap www

  • seqprep-data

    Bookworm:(1.3.2-8) Bullseye:(1.3.2-5) example data set for seqprep - only used for testing www

  • seqtk

    Bookworm:(1.3-4) Bullseye:(1.3-2) Fast and lightweight tool for processing sequences in the FASTA or FASTQ format www

  • seriation

    Bookworm:(0.1+git20210125.fc7b8cb-1) Bullseye:(0.1+git20201220.04e6202-1) finds a suitable linear order for a set of objects www

  • seriation-data

    Bookworm:(0.1+git20210125.fc7b8cb-1) Bullseye:(0.1+git20201220.04e6202-1) test data for seriation www

  • sextractor

    Bookworm & Bullseye:(2.25.0+ds-3) Dummy transitional package for name change www

  • sga

    Bookworm:(0.10.15-7+b1) Bullseye:(0.10.15-5) de novo genome assembler that uses string graphs www

  • shapeit4

    Bookworm:(4.2.2+dfsg-1) Bullseye:(4.2.0+dfsg-1) fast and accurate method for estimation of haplotypes (phasing) www

  • shiny-server

    Bookworm:(1.5.20.1002-1) put Shiny web apps online www

  • shovill-examples

    Bookworm:(1.1.0-9) Bullseye:(1.1.0-4) Test Data for shovill www

  • sibelia

    Bookworm & Bullseye:(3.0.7+dfsg-3+b1) comparative genomics tool www

  • sibelia-examples

    Bookworm & Bullseye:(3.0.7+dfsg-3) comparative genomics tool (example data) www

  • sibsim4

    Bookworm & Bullseye:(0.20-5) align expressed RNA sequences on a DNA template www

  • sickle

    Bookworm & Bullseye:(1.33+git20150314.f3d6ae3-2) windowed adaptive trimming tool for FASTQ files using quality www

  • siconos

    Bookworm:(4.4.0+dfsg-2) Bullseye:(4.3.1+dfsg-2) modeling and simulation of nonsmooth dynamical systems (simulation runner tool) www

  • siconos-mechanics-tools

    Bookworm:(4.4.0+dfsg-2) Bullseye:(4.3.1+dfsg-2) modeling and simulation of nonsmooth dynamical systems (mechanics tools) www

  • sigma-align

    Bookworm & Bullseye:(1.1.3-8) Simple greedy multiple alignment of non-coding DNA sequences www

  • sigviewer

    Bookworm:(0.6.4-3) Bullseye:(0.6.4-1) GUI viewer for biosignals such as EEG, EMG, and ECG www

  • silx

    Bookworm:(1.1.0+dfsg-5) Bullseye:(0.14.0+dfsg-1) Toolbox for X-Ray data analysis - Executables www

  • sim4

    Bookworm & Bullseye:(0.0.20121010-8) tool for aligning cDNA and genomic DNA www

  • sim4db

    Bookworm:(0~20150903+r2013-8+b3) Bullseye:(0~20150903+r2013-8+b1) batch spliced alignment of cDNA sequences to a target genome www

  • simkamin

    Bookworm:(1.5.3-7) Bullseye:(1.5.3-4) approximate comparative metagenomics method dedicated to NGS datasets www

  • simrisc

    Bookworm:(15.00.00-1) Bullseye:(14.02.00-1) simulation model for breast cancer risk www

  • siril

    Bookworm:(1.0.6-1+b2) Bullseye:(0.99.8.1-1) astronomical image processing tool www

  • siril-common

    Bookworm:(1.0.6-1) Bullseye:(0.99.8.1-1) architecture-independent files for siril www

  • ska

    Bookworm:(1.0+dfsg-2) Split Kmer Analysis www

  • skewer

    Bookworm:(0.2.2-6) Bullseye:(0.2.2-2) post-processing of high-throughput DNA sequence reads www

  • skycat

    Bookworm:(3.1.2+starlink1~b+dfsg-7+b3) Bullseye:(3.1.2+starlink1~b+dfsg-5+b3) Image visualization and access to catalogs and data for astronomy www

  • slang-xfig

    Bookworm:(0.2.0~.136-2) Bullseye:(0.2.0~.117-2) produce plots and drawings through Xfig's fig2dev in S-Lang www

  • sleepyhead

    Bookworm & Bullseye:(1.0.0-beta-2+dfsg-7) Sleep tracking software with a focus on monitoring CPAP treatment www

  • smalt

    Bookworm:(0.7.6-12) Bullseye:(0.7.6-9) Sequence Mapping and Alignment Tool www

  • smalt-examples

    Bookworm:(0.7.6-12) Bullseye:(0.7.6-9) Sequence Mapping and Alignment Tool (examples) www

  • smiles-scripts

    Bookworm:(0.2.0+dfsg1-4) command line tools to handle SMILES descriptors www

  • smithwaterman

    Bookworm:(0.0+git20160702.2610e25-12) Bullseye:(0.0+git20160702.2610e25-11) determine similar regions between two strings or genomic sequences www

  • smrtanalysis

    Bookworm:(0~20210112) Bullseye:(0~20210111) software suite for single molecule, real-time sequencing www

  • snakemake

    Bookworm:(7.21.0-1) Bullseye:(5.24.1-2) pythonic workflow management system www

  • snap

    Bookworm & Bullseye:(2013-11-29-11) location of genes from DNA sequence with hidden markov model www

  • sniffles

    Bookworm:(2.0.7-1) Bullseye:(1.0.12b+ds-1) structural variation caller using third-generation sequencing www

  • snp-sites

    Bookworm:(2.5.1-2) Bullseye:(2.5.1-1) Binary code for the package snp-sites www

  • snpomatic

    Bookworm:(1.0-6) Bullseye:(1.0-5) fast, stringent short-read mapping software www

  • soapsnp

    Bookworm:(1.03-5) Bullseye:(1.03-4) resequencing utility that can assemble consensus sequence of genomes www

  • solvate-doc

    Bookworm & Bullseye:(1.0-3) Documentation for solvate www

  • source-extractor

    Bookworm & Bullseye:(2.25.0+ds-3) Source extractor for astronomical images www

  • spaced

    Bookworm:(1.2.0-201605+dfsg-3) Bullseye:(1.2.0-201605+dfsg-2) alignment-free sequence comparison using spaced words www

  • spaln

    Bookworm:(2.4.7+dfsg-1) Bullseye:(2.4.1+dfsg-3) splicing-aware transcript-alignment to genomic DNA www

  • spaln-data

    Bookworm:(2.4.7+dfsg-1) Bullseye:(2.4.1+dfsg-3) splicing-aware transcript-alignment to genomic DNA (data) www

  • spass

    Bookworm & Bullseye:(3.9-1.1) automated theorem prover for first-order logic with equality www

  • spatialite-bin

    Bookworm:(5.0.1-2) Bullseye:(5.0.1-1) Geospatial extension for SQLite - tools www

  • splash

    Bookworm:(3.6.0-1) Bullseye:(2.10.1-1) Visualisation tool for Smoothed Particle Hydrodynamics simulation www

  • spoa

    Bookworm:(4.0.8-1) Bullseye:(4.0.7+ds-1) SIMD partial order alignment tool www

  • sprai

    Bookworm:(0.9.9.23+dfsg1-2+b12) Bullseye:(0.9.9.23+dfsg1-2) single-pass sequencing read accuracy improver www

  • spread-phy

    Bookworm:(1.0.7+dfsg-5) Bullseye:(1.0.7+dfsg-3) analyze and visualize phylogeographic reconstructions www

  • spview

    Bookworm:(2.0.1-1) Bullseye:(2.0.0~beta2-2) Spectrum Viewer www

  • squizz

    Bookworm & Bullseye:(0.99d+dfsg-3) Converter for genetic sequences and alignments www

  • ssake

    Bookworm:(4.0.1-1) Bullseye:(4.0-3) genomics application for assembling millions of very short DNA sequences www

  • ssake-examples

    Bookworm:(4.0.1-1) Bullseye:(4.0-3) example data for SSAKE, a genomic assembler of short reads www

  • sspace

    Bookworm:(2.1.1+dfsg-7) Bullseye:(2.1.1+dfsg-5) scaffolding pre-assembled contigs after extension www

  • ssshtest

    Bookworm:(0.0+git20220105.0d6df3d-1) stupid simple (ba)sh testing www

  • ssw-align

    Bookworm & Bullseye:(1.1-13) Smith-Waterman aligner based on libssw www

  • stacks

    Bookworm:(2.62+dfsg-1) Bullseye:(2.55+dfsg-1) pipeline for building loci from short-read DNA sequences www

  • staden

    Bookworm & Bullseye:(2.0.0+b11-4+b1) DNA sequence assembly (Gap4/Gap5), editing and analysis tools www

  • staden-common

    Bookworm & Bullseye:(2.0.0+b11-4) Architecture independent files for Staden www

  • staden-io-lib-examples

    Bookworm:(1.14.15-1) Bullseye:(1.14.13-4) programs for manipulating DNA sequencing files (usage examples) www

  • staden-io-lib-utils

    Bookworm:(1.14.15-1) Bullseye:(1.14.13-4) programs for manipulating DNA sequencing files www

  • stardata-common

    Bookworm:(0.8+nmu1) Bullseye:(0.8) Common framework to manage astronomy packages www

  • starplot

    Bookworm & Bullseye:(0.95.5-8.3+b1) 3-dimensional perspective star map viewer www

  • starpu-examples

    Bookworm:(1.3.10+dfsg-2) Bullseye:(1.3.7+dfsg-3) Task scheduler for heterogeneous multicore machines - exs www

  • stellarium

    Bookworm:(0.22.2-1) Bullseye:(0.20.4-3) real-time photo-realistic sky generator www

  • stellarium-data

    Bookworm:(0.22.2-1) Bullseye:(0.20.4-3) Stellarium data files www

  • step

    Bookworm:(4:22.12.3-1) Bullseye:(4:20.12.1-1) interactive physical simulator for KDE www

  • stiff

    Bookworm:(2.4.0-7+b1) Bullseye:(2.4.0-5) convert scientific FITS images to the TIFF format www

  • stilts

    Bookworm:(3.4.7-4) Bullseye:(3.4-2) Starlink Tables Infrastructure Library Tool Set www

  • stimfit

    Bookworm:(0.16.0-1.2+b1) Bullseye:(0.16.0-1+b1) Program for viewing and analyzing electrophysiological data www

  • stringtie

    Bookworm:(2.2.1+ds-2) Bullseye:(2.1.4+ds-4) assemble short RNAseq reads to transcripts www

  • subread

    Bookworm:(2.0.3+dfsg-1) Bullseye:(2.0.1+dfsg-1) toolkit for processing next-gen sequencing data www

  • subread-data

    Bookworm:(2.0.3+dfsg-1) Bullseye:(2.0.1+dfsg-1) data files for subread package www

  • suitename

    Bookworm:(0.4.130509+git20210223.ebb1325-1) Bullseye:(0.3.070919+git20180613.ebb1325-2) categorize each suite in an RNA backbone www

  • sumaclust

    Bookworm:(1.0.36+ds-2) Bullseye:(1.0.36+ds-1) fast and exact clustering of genomic sequences www

  • sumatra

    Bookworm:(1.0.36+ds-2) Bullseye:(1.0.36+ds-1) fast and exact comparison and clustering of sequences www

  • sumo

    Bookworm:(1.15.0+dfsg-1+deb12u1) Bullseye:(1.8.0+dfsg2-5) Simulation of Urban MObility (SUMO) www

  • surankco

    Bookworm & Bullseye:(0.0.r5+dfsg-3) Supervised Ranking of Contigs in de novo Assemblies www

  • surpyvor

    Bookworm:(0.5-2) modification of VCF files with SURVIVOR www

  • survex

    Bookworm:(1.4.4-1) Bullseye:(1.2.45-1) cave surveying and mapping software www

  • survex-aven

    Bookworm:(1.4.4-1) Bullseye:(1.2.45-1) sophisticated cave survey viewer for Survex www

  • survivor

    Bookworm:(1.0.7-4) Bullseye:(1.0.7-2) tool set for simulating/evaluating SVs www

  • svim

    Bookworm:(2.0.0-3) Bullseye:(1.4.2+ds-1) Structural variant caller for long sequencing reads www

  • swarp

    Bookworm:(2.41.5-1+b1) Bullseye:(2.41.4-2) Resample and co-add together FITS images www

  • swe-standard-data

    Bookworm:(4.0-20221111-2) Bullseye:(00004-1.1) Swiss Ephemeris library (standard set of ephemeris files).

  • sweed

    Bookworm & Bullseye:(3.2.1+dfsg-5) assessment of SNPs for their evolutionary advantage www

  • syrthes

    Bookworm:(4.3.5+20200129-dfsg1-1+b2) Bullseye:(4.3.5+20200129-dfsg1-1+b1) Transient thermal simulations in complex solid geometries www

  • syrthes-gui

    Bookworm & Bullseye:(4.3.5+20200129-dfsg1-1) Transient thermal simulations in complex solid geometries - GUI www

  • syrthes-tests

    Bookworm & Bullseye:(4.3.5+20200129-dfsg1-1) Test cases for SYRTHES www

  • syrthes-tools

    Bookworm:(4.3.5+20200129-dfsg1-1+b2) Bullseye:(4.3.5+20200129-dfsg1-1+b1) Transient thermal simulations in complex solid geometries - tools www
  • Back to top

  • T

  • t-coffee

    Bookworm:(13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) Bullseye:(13.41.0.28bdc39+dfsg-4) Multiple Sequence Alignment www

  • t-coffee-examples

    Bookworm:(13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) Bullseye:(13.41.0.28bdc39+dfsg-4) annotated examples for the use of T-Coffee www

  • tabix

    Bookworm:(1.16+ds-3) Bullseye:(1.11-4) generic indexer for TAB-delimited genome position files www

  • tandem-mass

    Bookworm & Bullseye:(1:201702011-1) mass spectrometry software for protein identification www

  • tantan

    Bookworm:(40-1) Bullseye:(23-1) low complexity and tandem repeat masker for biosequences www

  • tcd-utils

    Bookworm:(20061127-2.1) Bullseye:(20061127-2) convert Tide Constituent Database (TCD) files

  • tclfitsy

    Bookworm:(8.4.1+repack-3) Bullseye:(8.2+repack-2) Tcl FITS Extension www

  • teem-apps

    Bookworm:(1.12.0~20160122-5) Bullseye:(1.12.0~20160122-4) Tools to process and visualize scientific data and images - command line tools www

  • terraintool

    Bookworm & Bullseye:(1.16-3) Generates survex/therion terrain models from SRTM/NASADEM data. www

  • therion

    Bookworm:(6.1.6-3) Bullseye:(5.5.7ds1-2) Cave surveying - 2D and 3D drawing software www

  • therion-viewer

    Bookworm:(6.1.6-3) Bullseye:(5.5.7ds1-2) Cave surveying - 3D viewer for therion models www

  • theseus

    Bookworm:(3.3.0-13) Bullseye:(3.3.0-9) superimpose macromolecules using maximum likelihood www

  • theseus-examples

    Bookworm:(3.3.0-13) Bullseye:(3.3.0-9) superimpose macromolecules using maximum likelihood (examples) www

  • thesias

    Bookworm & Bullseye:(3.1.1-1) Testing Haplotype Effects In Association Studies www

  • tiddit

    Bookworm:(3.5.2+dfsg-1) Bullseye:(2.12.0+dfsg-3+b1) structural variant calling www

  • tigr-glimmer

    Bookworm:(3.02b-6) Bullseye:(3.02b-5) Gene detection in archea and bacteria www

  • timbl

    Bookworm & Bullseye:(6.5-3) Tilburg Memory Based Learner www

  • timblserver

    Bookworm & Bullseye:(1.14-3) Server extensions for Timbl www

  • tiny-dnn

    Bookworm:(1.0.0a3+ds-3) header only deep learning framework in C++ www

  • tksao

    Bookworm:(8.4.1+repack-3) Bullseye:(8.2+repack-2) Tk widgets for astronomical imaging and data visualization www

  • tm-align

    Bookworm & Bullseye:(20190822+dfsg-2) structural alignment of proteins www

  • tnseq-transit

    Bookworm:(3.2.7-1) Bullseye:(3.2.1-1) statistical calculations of essentiality of genes or genomic regions www

  • tombo

    Bookworm:(1.5.1-4+b1) Bullseye:(1.5.1-2+b1) identification of modified nucleotides from raw nanopore sequencing data www

  • topcat

    Bookworm:(4.8.7-3) Bullseye:(4.8-2) Tool for OPerations on Catalogues And Tables www

  • tophat-recondition

    Bookworm & Bullseye:(1.4-3) post-processor for TopHat unmapped reads www

  • topparser

    Bookworm:(1.3-3) Conversion utility from pockettopo to therion, for cave surveying

  • toppic

    Bookworm:(1.5.3+dfsg1-1) Bullseye:(1.3.0+dfsg1-4) Top-down proteoform identification and characterization (programs) www

  • toppic-common

    Bookworm:(1.5.3+dfsg1-1) Bullseye:(1.3.0+dfsg1-4) Top-down proteoform identification and characterization (common data) www

  • toppred

    Bookworm:(1.10-10) Bullseye:(1.10-8) transmembrane topology prediction www

  • tortoize

    Bookworm:(2.0.11-1) Bullseye:(2.0.1-2) Application to calculate ramachandran z-scores www

  • toulbar2

    Bookworm & Bullseye:(1.1.1+dfsg-1) Exact combinatorial optimization for Graphical Models www

  • toulbar2-doc

    Bookworm & Bullseye:(1.1.1+dfsg-1) Exact combinatorial optimization for Graphical Models - documentation www

  • trace2dbest

    Bookworm & Bullseye:(3.0.1-2) bulk submission of chromatogram data to dbEST www

  • trace2dbest-doc

    Bookworm & Bullseye:(3.0.1-2) Documentation and sample files for trace2dbest www

  • tracetuner

    Bookworm & Bullseye:(3.0.6~beta+dfsg-3) interpretation of DNA Sanger sequencing data www

  • transcalc

    Bookworm & Bullseye:(0.14-7) microwave and RF transmission line calculator www

  • transdecoder

    Bookworm:(5.0.1-5) Bullseye:(5.0.1-3) find coding regions within RNA transcript sequences www

  • transfuse

    Bookworm:(0.5.8-1+b2) Bullseye:(0.5.7-1) Runs formatted documents through transformations/translation www

  • transrate-tools

    Bookworm:(1.0.0-5) Bullseye:(1.0.0-3) helper for transrate www

  • transtermhp

    Bookworm & Bullseye:(2.09-5) find rho-independent transcription terminators in bacterial genomes www

  • travis

    Bookworm:(220729-1) Bullseye:(200504+hf2-1) trajectory analyzer and visualizer www

  • tree-ppuzzle

    Bookworm:(5.3~rc16+dfsg-9) Bullseye:(5.3~rc16+dfsg-8) Parallelized reconstruction of phylogenetic trees by maximum likelihood www

  • tree-puzzle

    Bookworm:(5.3~rc16+dfsg-9) Bullseye:(5.3~rc16+dfsg-8) Reconstruction of phylogenetic trees by maximum likelihood www

  • treeview

    Bookworm & Bullseye:(1.2.0+dfsg-1) Java re-implementation of Michael Eisen's TreeView www

  • treeviewx

    Bookworm:(0.5.1+git20100823.7e4d0e9-4+b1) Bullseye:(0.5.1+git20100823.7e4d0e9-3) Displays and prints phylogenetic trees www

  • trf

    Bookworm:(4.09.1-6) Bullseye:(4.09.1-4) locate and display tandem repeats in DNA sequences www

  • trf-examples

    Bookworm:(4.09.1-6) Bullseye:(4.09.1-4) locate and display tandem repeats in DNA sequences (examples) www

  • trim-galore

    Bookworm:(0.6.10-1) Bullseye:(0.6.6-1) automate quality and adapter trimming for DNA sequencing www

  • trimmomatic

    Bookworm & Bullseye:(0.39+dfsg-2) flexible read trimming tool for Illumina NGS data www

  • trinculo

    Bookworm:(0.96+dfsg-4) Bullseye:(0.96+dfsg-3) toolkit to carry out genetic association for multi-category phenotypes www

  • trnascan-se-common

    Bookworm:(2.0.10+ds-1) Bullseye:(2.0.7+ds-1) detection of transfer RNA genes in genomic sequence (common files) www

  • tunnelx

    Bookworm & Bullseye:(20190701-1) Cave Survey drawing software www

  • tvc

    Bookworm:(5.0.3+git20151221.80e144e+dfsg-5) Bullseye:(5.0.3+git20151221.80e144e+dfsg-3+b3) genetic variant caller for Ion Torrent sequencing platforms www

  • twms

    Bookworm:(0.07z+git20201202+bb7c3f8-2) Bullseye:(0.07z+git20201202+bb7c3f8-1) tiny web map service www
  • Back to top

  • U

  • ubertooth

    Bookworm:(2018.12.R1-5.1) Bullseye:(2018.12.R1-5) 2.4 GHz wireless development platform for Bluetooth experimentation www

  • ubertooth-firmware

    Bookworm:(2018.12.R1-5.1) Bullseye:(2018.12.R1-5) Firmware for Ubertooth www

  • ubertooth-firmware-source

    Bookworm:(2018.12.R1-5.1) Bullseye:(2018.12.R1-5) Source code for the Ubertooth firmware www

  • uc-echo

    Bookworm:(1.12-18) Bullseye:(1.12-15) error correction algorithm designed for short-reads from NGS www

  • ucto

    Bookworm:(0.21.1-2+b3) Bullseye:(0.21.1-2+b1) Unicode Tokenizer www

  • uctodata

    Bookworm & Bullseye:(0.8-2) Data files for Ucto www

  • ugene-data

    Bookworm:(40.1+dfsg-1) Bullseye:(34.0+dfsg-2) required data for UGENE - integrated bioinformatics toolkit www

  • uhd-doc

    Bookworm:(4.3.0.0+ds1-5) universal hardware driver for Ettus Research products - doc www

  • uhd-host

    Bookworm:(4.3.0.0+ds1-5) Bullseye:(3.15.0.0-4) universal hardware driver for Ettus Research products - host apps www

  • umap-learn

    Bookworm:(0.5.3+dfsg-2) Bullseye:(0.4.5+dfsg-2) Uniform Manifold Approximation and Projection www

  • umis

    Bookworm:(1.0.8-3+b1) Bullseye:(1.0.7-1+b1) tools for processing UMI RNA-tag data www

  • umis-examples

    Bookworm:(1.0.8-3) Bullseye:(1.0.7-1) tools for processing UMI RNA-tag data (examples) www

  • uncalled

    Bookworm:(2.2+ds1-1+b1) Bullseye:(2.2+ds-1) Utility for Nanopore Current Alignment to Large Expanses of DNA www

  • unicycler-data

    Bookworm:(0.5.0+dfsg-1) Bullseye:(0.4.8+dfsg-2) hybrid assembly pipeline for bacterial genomes (data package) www

  • unifrac-tools

    Bookworm:(1.2-2) high-performance phylogenetic diversity calculations (binaries) www

  • unikmer

    Bookworm:(0.19.1-1) Toolkit for nucleic acid k-mer analysis www

  • units-filter

    Bookworm:(4.2-3) Bullseye:(4.0-1) Parser for expressions concerning physical values

  • units-master

    Bookworm:(4.2-3) Powerful units converter with a GUI

  • urg-utils

    Bookworm & Bullseye:(0.8.18-2) utilities for Hokuyo URG/UTM laser range scanners
  • Back to top

  • V

  • v-sim

    Bookworm:(3.7.2-9) Bullseye:(3.7.2-8+b2) Visualize atomic structures www

  • v-sim-common

    Bookworm:(3.7.2-9) Bullseye:(3.7.2-8) Visualize atomic structures (support files) www

  • v-sim-plugins

    Bookworm:(3.7.2-9) Bullseye:(3.7.2-8+b2) Plugins for V_Sim (a 3D visualization package) www

  • varna

    Bookworm:(3-93+ds-4) Bullseye:(3-93+ds-3) Visualization Applet for RNA www

  • vcfanno

    Bookworm:(0.3.5+ds-1) Bullseye:(0.3.2+ds-2) annotate a VCF with other VCFs/BEDs/tabixed files www

  • vcfanno-examples

    Bookworm:(0.3.5+ds-1) Bullseye:(0.3.2+ds-2) examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files www

  • vcftools

    Bookworm:(0.1.16-3+b1) Bullseye:(0.1.16-2) Collection of tools to work with VCF files www

  • vdjtools

    Bookworm:(1.2.1+git20190311+repack-1) Bullseye:(1.2.1+git20190311-5) framework for post-analysis of B/T cell repertoires www

  • velvet

    Bookworm:(1.2.10+dfsg1-8) Bullseye:(1.2.10+dfsg1-7) Nucleic acid sequence assembler for very short reads www

  • velvet-example

    Bookworm:(1.2.10+dfsg1-8) Bullseye:(1.2.10+dfsg1-7) Example data for the Velvet sequence assembler www

  • velvet-long

    Bookworm:(1.2.10+dfsg1-8) Bullseye:(1.2.10+dfsg1-7) Nucleic acid sequence assembler for very short reads, long version www

  • velvet-tests

    Bookworm:(1.2.10+dfsg1-8) Bullseye:(1.2.10+dfsg1-7) Test data for the Velvet sequence assembler www

  • velvetoptimiser

    Bookworm:(2.2.6-5) Bullseye:(2.2.6-3) automatically optimise Velvet do novo assembly parameters www

  • veusz

    Bookworm:(3.6.2-1) Bullseye:(3.3.1-1) 2D and 3D scientific plotting application with graphical interface www

  • vg-docs

    Bookworm & Bullseye:(1.30.0+ds-1) tools for working with genome variation graphs -- docs www

  • virulencefinder

    Bookworm:(2.0.4-3) Bullseye:(2.0.3+git20190809.dde157a-3) identify virulence genes in total or partial sequenced isolates of bacteria www

  • virulencefinder-examples

    Bookworm:(2.0.4-3) Bullseye:(2.0.3+git20190809.dde157a-3) example data for virulencefinder www

  • visp-images-data

    Bookworm:(3.5.0-1) Bullseye:(3.3.0-1) visual servoing library - dataset reference files www

  • vistrails

    Bookworm:(3.0~git+9dc22bd.dfsg.1-1.1) Bullseye:(3.0~git+9dc22bd-2) Science visualisation workflow toolkit www

  • vitables

    Bookworm:(3.0.2-4) Bullseye:(3.0.0-1.1) graphical tool to browse and edit PyTables and HDF5 files www

  • vmatch

    Bookworm:(2.3.1+dfsg-8) Bullseye:(2.3.1+dfsg-6) large scale sequence analysis software www

  • voro++

    Bookworm & Bullseye:(0.5+revert-to-0.4.6+dfsg1-1) library for the computation of the Voronoi diagram www

  • voro++-examples

    Bookworm & Bullseye:(0.5+revert-to-0.4.6+dfsg1-1) library for the computation of the Voronoi diagram (examples) www

  • voronota

    Bookworm:(1.22.3149-2) Bullseye:(1.22.3149-1) Voronoi diagram-based tool to find atom contacts www

  • votca-data

    Bookworm:(2022.1-1) VOTCA molecular dynamics analysis - basis sets and scripts www

  • votca-tools

    Bookworm:(2021.2-1) Bullseye:(1.6.4-1) VOTCA's tools library, helper binaries www

  • votca-tutorials

    Bookworm:(2022.1-1) VOTCA molecular dynamics analysis - tutorials www

  • vt

    Bookworm & Bullseye:(0.57721+ds-3) toolset for short variant discovery in genetic sequence data www

  • vt-examples

    Bookworm & Bullseye:(0.57721+ds-3) toolset for short variant discovery in genetic sequence data (examples) www
  • Back to top

  • W

  • wannier90

    Bookworm:(3.1.0+ds-7) Bullseye:(3.1.0+ds-4) Maximally Localized Wannier Functions - executables www

  • wannier90-data

    Bookworm:(3.1.0+ds-7) Bullseye:(3.1.0+ds-4) Maximally Localized Wannier Functions - documentation and examples www

  • wcslib-tools

    Bookworm:(7.12+ds-1+b1) Bullseye:(7.4+ds-2) Command line tools utilizing wcslib www

  • wcstools

    Bookworm:(3.9.7-1) Bullseye:(3.9.6-1) Handle the WCS of a FITS image www

  • weightwatcher

    Bookworm:(1.12+dfsg-3) Bullseye:(1.12+dfsg-2) Combine maps and polygon data for astronomical image processing www

  • weka

    Bookworm:(3.6.14-3) Bullseye:(3.6.14-2) Machine learning algorithms for data mining tasks www

  • wham-align

    Bookworm & Bullseye:(0.1.5-8) Wisconsin's High-Throughput Alignment Method www

  • wigeon

    Bookworm:(20101212+dfsg1-5) Bullseye:(20101212+dfsg1-4) reimplementation of the Pintail 16S DNA anomaly detection utility www

  • wise

    Bookworm & Bullseye:(2.4.1-23) comparison of biopolymers, like DNA and protein sequences www

  • worldwind

    Bookworm & Bullseye:(0.5.0-10) 3D Virtual Globe www

  • wsclean

    Bookworm:(3.1-3+b1) Bullseye:(2.10.1-1+b1) Fast generic widefield interferometric imager www

  • wtdbg2

    Bookworm:(2.5-8) Bullseye:(2.5-7) de novo sequence assembler for long noisy reads www

  • wtdbg2-examples

    Bookworm:(2.5-8) Bullseye:(2.5-7) Examples for wtdbg - de novo sequence assembler www

  • wxastrocapture

    Bookworm:(1.8.1+git20140821.796e1a1+dfsg-2+b1) Bullseye:(1.8.1+git20140821.796e1a1+dfsg-1) Windows linuX Astronomy Capture www
  • Back to top

  • X

  • xbs

    Bookworm:(0-11) Bullseye:(0-10) 3-d models and movies of molecules

  • xcas

    Bookworm:(1.9.0.35+dfsg2-1.1) Bullseye:(1.6.0.41+dfsg1-1) Computer Algebra System - console and graphical calculator www

  • xcrysden

    Bookworm:(1.6.2-4+b7) Bullseye:(1.6.2-4) Crystalline and Molecular Structure Visualizer www

  • xcrysden-data

    Bookworm & Bullseye:(1.6.2-4) Crystalline and Molecular Structure Visualizer (Data Files) www

  • xdrawchem

    Bookworm:(1:1.11.0-4) Bullseye:(1:1.11.0-2) Chemical structures and reactions editor

  • xeus-python-dev

    Bookworm:(0.14.3+~0.5.0-3) Bullseye:(0.9.5-1) Native jupyter kernel for python (headers) www

  • xfoil

    Bookworm:(6.99.dfsg+1-3) Bullseye:(6.99.dfsg+1-1) program for the design and analysis of subsonic airfoils www

  • xgboost

    Bookworm:(1.7.4-1) Bullseye:(1.2.1-1) Scalable and Flexible Gradient Boosting (Executable) www

  • xgterm

    Bookworm:(2.1+dfsg-1) Bullseye:(2.0+2020.06.15+dfsg-1) Terminal emulator to work with IRAF www

  • ximtool

    Bookworm:(2.1+dfsg-1) Bullseye:(2.0+2020.06.15+dfsg-1) Interactive image display program for the X Window System www

  • xmakemol

    Bookworm:(5.16-10+b1) Bullseye:(5.16-10) program for visualizing atomic and molecular systems www

  • xmakemol-gl

    Bookworm:(5.16-10+b1) Bullseye:(5.16-10) program for visualizing atomic and molecular systems (OpenGL) www

  • xmds

    Bookworm & Bullseye:(1.6.6-7) eXtensible Multi-Dimensional Simulator www

  • xmds2

    Bookworm:(3.1.0+dfsg2-3) Bullseye:(3.0.0+dfsg-5) eXtensible Multi-Dimensional Simulator www

  • xmpsolve

    Bookworm:(3.2.1-7) Bullseye:(3.2.1-2) Multiprecision polynomial solver (graphical version) www

  • xpa-tools

    Bookworm & Bullseye:(2.1.20-1) Tools for seamless communication between Unix programs www

  • xplot

    Bookworm:(1.19-9.1) Bullseye:(1.19-9) simple on-screen x-y column data plotter

  • xplot-xplot.org

    Bookworm & Bullseye:(0.90.7.1-4) fast tool to graph and visualize lots of data www

  • xpore

    Bookworm:(2.1-1) Nanopore analysis of differential RNA modifications www

  • xppaut

    Bookworm & Bullseye:(6.11b+1.dfsg-1.1) Phase Plane Plus Auto: Solves many kinds of equations www

  • xpython

    Bookworm:(0.14.3+~0.5.0-3) Bullseye:(0.9.5-1) Native jupyter kernel for python (binary) www

  • xtb

    Bookworm:(6.5.1-3) semiempirical extended tight-binding program package www

  • xtide

    Bookworm & Bullseye:(2.15.2-1) provides tide and current predictions www

  • xtide-coastline

    Bookworm:(20020202-1.2) Bullseye:(20020202-1.1) coastline data for xtide

  • xtide-data

    Bookworm:(20191229-1.1) Bullseye:(20191229-1) Harmonics data for xtide www

  • xtide-data-nonfree

    Bookworm:(20100529-1.1) Bullseye:(20100529-1) Harmonics data for xtide (Canada, Netherlands, Germany and UK) www

  • xyscan

    Bookworm:(4.64-2) Bullseye:(4.50-1) data thief for scientists www
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  • Y

  • yagv

    Bookworm & Bullseye:(0.4~20171211.r234ef16+dfsg-2) yet another G-code viewer www

  • yaha

    Bookworm:(0.1.83-3) Bullseye:(0.1.83-2) find split-read mappings on single-end queries www

  • yale

    Bookworm:(5.0.95-3) Bullseye:(5.0.95-2) stellar data set from the Yale Bright Star Catalog www

  • yanagiba

    Bookworm:(1.0.0-5) Bullseye:(1.0.0-2) filter low quality Oxford Nanopore reads basecalled with Albacore www

  • yanosim

    Bookworm:(0.1-5) Bullseye:(0.1-3) read simulator nanopore DRS datasets www

  • yorick

    Bookworm & Bullseye:(2.2.04+dfsg1-12) interpreted language and scientific graphics www

  • yorick-av

    Bookworm:(0.0.6-1+b1) Bullseye:(0.0.5-1+b1) write movies from Yorick in various formats www

  • yorick-cubeview

    Bookworm:(2.2-2.2) Bullseye:(2.2-2.1) 3D FITS data viewer specialized in spectro-imaging www

  • yorick-curses

    Bookworm & Bullseye:(0.1-6) interface to the (n)curses library for the Yorick language

  • yorick-data

    Bookworm & Bullseye:(2.2.04+dfsg1-12) interpreted library for the Yorick language www

  • yorick-dev

    Bookworm & Bullseye:(2.2.04+dfsg1-12) development files for the Yorick interpreted language www

  • yorick-gl

    Bookworm & Bullseye:(1.1+cvs20070922+dfsg-6.1) OpenGL 3D graphics support for the Yorick language www

  • yorick-gy

    Bookworm:(0.0.5-2) Bullseye:(0.0.5-1) GObject introspection and Gtk bindings for Yorick www

  • yorick-gyoto

    Bookworm:(1.4.4-8+b3) Bullseye:(1.4.4-3+b7) General relativistic geodesic integration for the Yorick language www

  • yorick-hdf5

    Bookworm & Bullseye:(0.8.0-8+b2) Hierarchical Data Format 5 interface for the Yorick language

  • yorick-imutil

    Bookworm & Bullseye:(0.5.7-3) fast image manipulation routines for the Yorick language

  • yorick-mira

    Bookworm & Bullseye:(1.1.0+git20170124.3bd1c3~dfsg1-2) optical interferometry image reconstruction within Yorick www

  • yorick-ml4

    Bookworm:(0.6.0-4) Bullseye:(0.6.0-3) Matlab file format support for the Yorick language

  • yorick-mpeg

    Bookworm:(0.1-4) Bullseye:(0.1-3) MPEG output support for the Yorick language www

  • yorick-mpy-common

    Bookworm & Bullseye:(2.2.04+dfsg1-12) Message Passing Yorick (common files) www

  • yorick-mpy-mpich2

    Bookworm & Bullseye:(2.2.04+dfsg1-12) Message Passing Yorick (MPICH2 build) www

  • yorick-mpy-openmpi

    Bookworm & Bullseye:(2.2.04+dfsg1-12) Message Passing Yorick (OpenMPI build) www

  • yorick-optimpack

    Bookworm & Bullseye:(1.3.2+dfsg+1.4.0-1) optimization of large scale problems for the Yorick language www

  • yorick-soy

    Bookworm & Bullseye:(1.4.0-3) sparse matrix operations for the Yorick language www

  • yorick-svipc

    Bookworm:(0.16-5+b4) Bullseye:(0.16-5+b2) interprocess communication (shared memory...) for Yorick www

  • yorick-yeti

    Bookworm:(6.4.0-1.1+b1) Bullseye:(6.4.0-1) utility plugin for the Yorick language www

  • yorick-yeti-fftw

    Bookworm:(6.4.0-1.1+b1) Bullseye:(6.4.0-1) FFT plugin for the Yorick language www

  • yorick-yeti-regex

    Bookworm:(6.4.0-1.1+b1) Bullseye:(6.4.0-1) POSIX regular expressions for the Yorick language www

  • yorick-yeti-tiff

    Bookworm:(6.4.0-1.1+b1) Bullseye:(6.4.0-1) TIFF image format input for the Yorick language www

  • yorick-ygsl

    Bookworm:(1.2.1-1+b4) Bullseye:(1.2.1-1+b3) GSL special functions plugin for the Yorick language www

  • yorick-ynfft

    Bookworm & Bullseye:(1.0.3-1) nonequispaced fast Fourier transform for Yorick www

  • yorick-yutils

    Bookworm:(1.5.2-2) Bullseye:(1.5.2-1.1) various utilities for the Yorick language www

  • yorick-z

    Bookworm:(1.2.0+cvs20080115-5.1) Bullseye:(1.2.0+cvs20080115-5+b1) zlib, jpeg and png support for the Yorick language www
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  • Z

  • z3

    Bookworm:(4.8.12-3.1) Bullseye:(4.8.10-1) theorem prover from Microsoft Research www

  • z88

    Bookworm & Bullseye:(13.0.0+dfsg2-6) Finite Element Analysis Program - runtime www

  • z88-data

    Bookworm & Bullseye:(13.0.0+dfsg2-6) Finite Element Analysis Program - data www

  • zalign

    Bookworm & Bullseye:(0.9.1-5) parallel local alignment of biological sequences www

  • zegrapher

    Bookworm:(3.1.1-4) Bullseye:(3.1.1-1) plotting mathematical functions and sequences on the plane www

  • zfp

    Bookworm:(1.0.0-7) Fixed-Rate Compressed Floating-Point Arrays - binary programs www

  • zimpl

    Bookworm & Bullseye:(3.3.6-4) mathematical modeling language for optimization problems www

  • ztex-bmp

    Bookworm & Bullseye:(20120314-2) universal macro processor www

Packages Types